RNA id: TU235746



Basic Information


Item Value
RNA id TU235746
length 328
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G208232
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95979156 ~ 95979483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattctggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagacttttGCAgacaggttttcttccagaatggtcctgtatttggcttcatccatcttcccatcaatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235741 lncRNA upstream 5304 95973628 ~ 95973852 (+) True G208227
TU235738 lncRNA upstream 6428 95972500 ~ 95972728 (+) True G208224
TU235625 lncRNA upstream 21458 95863858 ~ 95957698 (+) True G208117
TU235596 lncRNA upstream 133033 95845888 ~ 95846123 (+) True G208093
TU235592 lncRNA upstream 135542 95843190 ~ 95843614 (+) True G208089
TU235752 lncRNA downstream 14279 95993762 ~ 96001239 (+) True LOC110500522
TU235759 lncRNA downstream 19478 95998961 ~ 95999354 (+) True G208244
TU235770 lncRNA downstream 53444 96032927 ~ 96033141 (+) True G208255
TU235772 lncRNA downstream 65245 96044728 ~ 96045086 (+) True G208257
TU235777 lncRNA downstream 65728 96045211 ~ 96046999 (+) True G208262
XM_036934469.1 mRNA upstream 91042 95885587 ~ 95888114 (+) True LOC118936882
XM_036960053.1 mRNA upstream 216013 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA upstream 216013 95750989 ~ 95763143 (+) True LOC110500485
XM_036960052.1 mRNA upstream 231940 95731857 ~ 95747216 (+) True LOC110500475
XM_036934462.1 mRNA upstream 280416 95688561 ~ 95698740 (+) True LOC110502494
XM_036960062.1 mRNA downstream 13723 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA downstream 21847 96001330 ~ 96011204 (+) False LOC110500522
XM_021577940.2 mRNA downstream 54737 96034220 ~ 96043570 (+) True LOC110500533
XM_036960132.1 mRNA downstream 991908 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 1102452 97081935 ~ 97085041 (+) True LOC110500585
TU234200 other upstream 1272908 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1346889 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1416932 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1541474 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1877284 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 248310 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 632946 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1506993 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1639134 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1718628 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile