RNA id: TU235777


Basic Information

Item Value
RNA id TU235777
length 1627
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G208262
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96045211 ~ 96046999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTTATGAAGAACCAAAAACTACAACAGTTAGTTGAATTAGATCATTAGGAGATGAACtggagaaaaatacattttaagattctaaaacattaacatgtatcGATCTAAATAATGGAAGTAATGTAAACCAAACCAAAGGTATTTAGCTAGATCTAGGTATTTAGCTAGATCTAGGCATTTTTTCTATAAAGGACATGGACTCAACTTCTCAACATCAGAGTAGAAAAACTTTTTCATTTTCAAAATAACTCTTAATATATTTTCATAATGAGTGACATAAGGTAATGCAGTAACACTTGACATCAAGTTCTTATAAACATGTAGTAACTTTGTGATCATTACAACGATAGCAACATGGttgataggataggataggacttTAGAGATAATGGAGTTTATTACACAAATGGAATAAGGAACAGTCACGATTGCTTTTGTGtacagtagttacaaaaccaCTCAGCTCATTGCTATGCAATTTAAATGTGATTACCAAAGTATTACGCATCATGCTAATAAAATAATGACAGTGTTGTTACACAGGCTCAATAACAGTTTAATATTACTGAGAAAGCTAACAACAACTGTTGAATTATGGCTATTAAGTGTAAGGGGACTAAATATCCCAAAACTGCCTTCTTGAAATCAATGACAGCCAAATAGTTGGAAAATCATGTTCATTTGTATTCTAAGTAAACTAACCCTTTAAAAGATAGTACAGTGTGTGTTTTGAAACAAGAACATTGACATGGACAAAGAggtttaaatgtgtttttttttttttgctaagcATCCAACTTTCTGTTTGCAGTTTTTACAAATGGCTTTTAATTACTCTGCAGTATTTTCAGGTGTCATAATATGAACTGCAACTTTCAACCTTATCAGTGGCATGTTGAAAGAGCCATGCAGTAATTCGTTGTCATAACCTATTCATATTTATCTGTACAAAATattgttggttggttggtttgacTTTGTACACCTGTGGTACAAAGTCTGTGCTATGTACACCTGTGGTATGTTCAGGAGAATGGACATTTACAGAATTTTCcgatagaaatgtattgtgtagatcaAATATGACTGTCAGATAGATTGGAATAGAATAGGAGATTGAGTTtgctctattcattctatttctatctgcaacatgcAGTTCCTGATACAGCCCTGCCTTTAGTTGAAGGCAACCAATCCAATAGTTTCTGTTCCAGACACAACCCTCCCTTCAGTCAACGGCAGCCAATCCAATAATTTTTTGAAAAGTTGTCACTTCCagagatctgtattcaaatatATTTGTTGAAGTAGTAATTTTGGGGGGGATTTGTATTCAAATAGTCACCTCCAAAGTAACAAtttatccccccctccccctaaaAAGAGATACTTTCCGCGAAGCATGTTAAGAACGGCAGTTATCCCAGGTCTACAATCAGATAGGGTAATAATACAGTGAGGTATTGGTGTGCTTTCTGGCCAACTCCTATGATCGTTGTGGTAAACAGATCTGGGGCAGGCTAGAATCAAGTTAAGGTATGGACTTAAAATGTAACTTTTGTGCGTGAGGTCATTGCATTTTATCTGGTCATTGCACACCTGAAGTGATCAGTCTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235772 lncRNA upstream 125 96044728 ~ 96045086 (+) True G208257
TU235770 lncRNA upstream 12070 96032927 ~ 96033141 (+) True G208255
TU235752 lncRNA upstream 43972 95993762 ~ 96001239 (+) True LOC110500522
TU235759 lncRNA upstream 45857 95998961 ~ 95999354 (+) True G208244
TU235746 lncRNA upstream 65728 95979156 ~ 95979483 (+) True G208232
TU235778 lncRNA downstream 1316 96048315 ~ 96052238 (+) True G208263
TU235782 lncRNA downstream 11003 96058002 ~ 96058230 (+) True G208267
TU235783 lncRNA downstream 13130 96060129 ~ 96060389 (+) True G208268
TU235898 lncRNA downstream 74006 96121005 ~ 96121787 (+) True G208364
TU235900 lncRNA downstream 75893 96122892 ~ 96123274 (+) True G208366
XM_021577940.2 mRNA upstream 1641 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 34007 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 34007 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 157097 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 282068 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 924392 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 1034936 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 1038930 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 1038943 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 1481708 97528707 ~ 97596323 (+) False LOC110500611
TU234200 other upstream 1338963 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1412944 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1482987 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1607529 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1943339 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 180794 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 565430 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1439477 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1571618 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1651112 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile