RNA id: TU235782



Basic Information


Item Value
RNA id TU235782
length 229
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G208267
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96058002 ~ 96058230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGAAGCATGAAGCCTGGCGTTCCCCCCAGAGAGATGATGAAGGAAGTGATGACAGACAAGAAGAGGAAGTAGGGGAACATTGTGtcacagctgtctctgattggacaGTGACCCAGGGAGGCAGTCAGGTTACTGGGCTGAGAACCTGCCCCTGTCACCGCCACACACCTGCACTGGTGAAACacctggaggagaggacatgggGAGGGATCACTGAgtaaaacatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235778 lncRNA upstream 5764 96048315 ~ 96052238 (+) True G208263
TU235777 lncRNA upstream 11003 96045211 ~ 96046999 (+) True G208262
TU235772 lncRNA upstream 12916 96044728 ~ 96045086 (+) True G208257
TU235770 lncRNA upstream 24861 96032927 ~ 96033141 (+) True G208255
TU235752 lncRNA upstream 56763 95993762 ~ 96001239 (+) True LOC110500522
TU235783 lncRNA downstream 1899 96060129 ~ 96060389 (+) True G208268
TU235898 lncRNA downstream 62775 96121005 ~ 96121787 (+) True G208364
TU235900 lncRNA downstream 64662 96122892 ~ 96123274 (+) True G208366
TU235903 lncRNA downstream 67278 96125508 ~ 96125753 (+) True G208369
TU235907 lncRNA downstream 68000 96126230 ~ 96126852 (+) True G208371
XM_021577940.2 mRNA upstream 14432 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 46798 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 46798 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 169888 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 294859 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 913161 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 1023705 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 1027699 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 1027712 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 1470477 97528707 ~ 97596323 (+) False LOC110500611
TU234200 other upstream 1351754 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1425735 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1495778 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1620320 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1956130 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 169563 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 554199 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1428246 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1560387 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1639881 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile