RNA id: TU235783



Basic Information


Item Value
RNA id TU235783
length 261
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G208268
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96060129 ~ 96060389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCCAATAGAGTTTAGTTGAATACATAAAAGACGATGGGGGAGGTTTGTATCCAGCGTGGAGACTTACCCTGTGTATGACATGGTTATCCCAGCCACCTTGGCGTTGTCACAGCCCATGGCGAAGAAGAAGAGGGACAGGAAGTACCCCAGCAGGGAGGTCCCGAAGGCGAACTTAGCAGCTCCCATGACGCCCAGCTTGAACTTCTTCATGAGCACACCACCTGAGAACATCCCCAGAGCCACTGCAGGGATGTTGACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235782 lncRNA upstream 1899 96058002 ~ 96058230 (+) True G208267
TU235778 lncRNA upstream 7891 96048315 ~ 96052238 (+) True G208263
TU235777 lncRNA upstream 13130 96045211 ~ 96046999 (+) True G208262
TU235772 lncRNA upstream 15043 96044728 ~ 96045086 (+) True G208257
TU235770 lncRNA upstream 26988 96032927 ~ 96033141 (+) True G208255
TU235898 lncRNA downstream 60616 96121005 ~ 96121787 (+) True G208364
TU235900 lncRNA downstream 62503 96122892 ~ 96123274 (+) True G208366
TU235903 lncRNA downstream 65119 96125508 ~ 96125753 (+) True G208369
TU235907 lncRNA downstream 65841 96126230 ~ 96126852 (+) True G208371
TU235911 lncRNA downstream 79542 96139931 ~ 96140548 (+) True G208374
XM_021577940.2 mRNA upstream 16559 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 48925 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 48925 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 172015 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 296986 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 911002 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 1021546 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 1025540 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 1025553 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 1468318 97528707 ~ 97596323 (+) False LOC110500611
TU234200 other upstream 1353881 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1427862 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1497905 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1622447 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1958257 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 167404 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 552040 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1426087 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1558228 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1637722 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile