RNA id: TU236017


Basic Information

Item Value
RNA id TU236017
length 886
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G208469
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96125952 ~ 96126837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgataacgcCTGCCTCTGATATCTTGTCAGTGTGGCCTGCCAATCGGATGGATGCACACAAAACTATGAGACATTAAACATGTGAAACTGTAGAGTTTTGTTTATTATTTTGAATAATGTGTCACATTTTTGCAACCTTGACACAGCTCATTTTGTTTTGCTGTGACACAGTGGTCACTGATCAGTCAATCTCCCCCTGTTTGTCTGACTGTCAGAGACTTCTAACTCACCTTTTGAGTGAAGCCTGGGAGCCAAGGCTACTTCCTAGTTCCTAGTTCCTAGTTCCTACCCCATACCAAAATACCCATCTTTGAAAGTTCCAATGTAAAATAGCACTCTTTTTGTCTAAATTCATCTTTATTTGCCATAATtattgaaaaaaacaaacatgtattaTCTTTTACAATGAGAACCAAACATGCTTCCCTATCCTCTAAGCAAGAACATTAGCCTTGTATTTTTATATACTGTAGTTGACACATGATGATGATTAAATGACTAATGGTTTTCTCTCACCAGTACCTTGCACTTAACACATGTAGCAATATTTACActtaataaaaaaatacacagTATTTGTTAAGTAAACATGATTCATTTCCTTGCTGGTTGATGCTCCATTTTGTACAATATCTATGCTGTACAgtaaatattaaaaaaaaaaaaaaaaaactcttttTAGatatacattatttattttttaccattttgTAATTTAGACGCTATTCTGTAGTTACTATATTGCCAGAATTACTGGAAGTGCCTATTGGTATTATGTGTATCGTACAGTCAATATGTTTTCAGATCAGTAGAAGTTGTCACAAGATGAACAATGTAGATGTTGTGATGGGAAATACATTGTATTACAATACTTTAATTTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235902 lncRNA downstream 1364 96123042 ~ 96124588 (-) True G208368
TU235895 lncRNA downstream 8512 96109996 ~ 96117440 (-) True G208361
TU235870 lncRNA downstream 10203 96068831 ~ 96115749 (-) False G208341
TU235872 lncRNA downstream 10203 96068831 ~ 96115749 (-) False G208341
TU235874 lncRNA downstream 56595 96068831 ~ 96069357 (-) True G208341
TU236015 lncRNA upstream 332 96127169 ~ 96128073 (-) False G208468
TU236016 lncRNA upstream 354 96127191 ~ 96129234 (-) True G208468
TU236019 lncRNA upstream 2890 96129727 ~ 96130881 (-) False LOC110502509
TU236018 lncRNA upstream 3434 96130271 ~ 96131019 (-) False LOC110502509
TU236022 lncRNA upstream 9010 96135847 ~ 96136489 (-) True G208473
XM_036960073.1 mRNA downstream 33547 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 242273 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 404837 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 461449 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 493980 95628449 ~ 95631972 (-) False parietopsin
XM_036960080.1 mRNA upstream 3474 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 507004 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 520293 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 520293 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 520293 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 293590 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 439088 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 439088 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 516166 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 601725 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 7240 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 295029 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1289984 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1374335 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1492022 97618859 ~ 97619212 (-) True G209841

Expression Profile