RNA id: TU236016


Basic Information

Item Value
RNA id TU236016
length 1745
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G208468
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96127169 ~ 96129234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGTAATCCAGAACCTTCCTGCAGAAAAAAGAGAACCCCCATGTTCAGAACTTCAGTGAACTTTCTAGTAGCAGACACAAACATTTTGATCCATTCATGTTCCTCGGAGACAAAGGCCACACTGTATGCAACGCTTGGCTTCACCAGAGATGCAGTAAAGAAGTCAATGGAATATGCATTCAGTGGGTGATAGAAGGACGCTGGACTTGCTGGACATTCAACCAATCTGATCCCATCGAAGTGGATATTGGTCAAATCCGTCATTGATGTATTGTAACGggcccacaatgtggttactCAAATCTGATGTGGATATATTCACCTCATAACATGTAAAAAGCCGTCCCTTTTCAAGTTTAGAAGAtgtgactgctaaatgctaactcctgTTTGTGTTAGCTGGTAGCGtagctagcatacagaaatcAGTGGTGGTAGTCAAAGTCGTTTTTTAAattgtaatgcagttgattgatGACGATGACATCAACATGTACGGGGGTTGACATCTATACAAGCATTGTACTCTGATtttttacctcaacatagtgtgGAACACACATATAAACAACAGTCTAAATGTAGGATCATTTGGCTGGGGGGCAATGAGGAGATTCGGGATCTTTCTCGCATGGCCTCTTTCCCCCACACGTTTCCATGGCAATGTTTTGGTCaagttccattgacctctttaccatCTGTCCTTTCTATATGATCTTTATTATTGAACTGAATGACACTGTGTGAGAAACAGGTTACCATTGACATGATGTGATTCTGAATGACACTGTGTGAGAAACAGGTTACCATTGACATGATATGATTCTGAATGACACTGTGTGAGCAACAGGTTACTATTTACATGATGTGATTCTGAATGACACTGTGTGAGCAACAGGTTACTATTTACATGATGTGATTCTGAATGACACTGTGTGAGCAACACGTTACTATTTACATGATGTGATTCTGAATGACGCTGTGTGAGCAACAGGTTACCATTGACATGATATGATTCTGCCATCTACCATGTGGTCTAAGTctttttataaactgggtggttcgagccctgaatgctgattggctggtatgacaaaacatttattttttactgctctgattacgttggtaaccagtttataatagcaataaggcacctcggggggtttgtgatatatttCCAGtattccacggctaagggctgtgtccaggcactccacgttgcgtcgtGCATTAAAAAAACAACCCGTAGCCgtggaatattggccatataccacaccccctcgggccttattgcttaaatcaCACACCCAGAACATATGGTCTAAGTCTTCATCACACCCAGAACATATGGTCTAAGTCTTCATCACACCCAGAACATAACATATGGTCTAAGTCTTCATCACACCCAGAACATATGATCTAAGTCTTCATCACACCCAGCACATAACATATGATCTAAGTCTTCATCACACCCAGAACATATGGTCTAAGTCTTCATCACACCCAGAGCataacatgtctgtctctctcagtgtttTTCTGTGATATCTAACTCTGCTGTTGCCACCACCTGTGAAACTGCAATATGATACGTCTTTTCCATTTATTtacaaaagtttttaaaaatacCTGGAATGTTTTGTGAAATAATATTTGTTATGGTATGGAGCCCCTTATGTTAATATGATCATGTTTATGGACATTCTAATTTCTGATGCATGATAGTACACAGAATGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236017 lncRNA downstream 354 96125952 ~ 96126837 (-) True G208469
TU235902 lncRNA downstream 2603 96123042 ~ 96124588 (-) True G208368
TU235895 lncRNA downstream 9751 96109996 ~ 96117440 (-) True G208361
TU235872 lncRNA downstream 11442 96068831 ~ 96115749 (-) False G208341
TU236019 lncRNA upstream 493 96129727 ~ 96130881 (-) False LOC110502509
TU236018 lncRNA upstream 1037 96130271 ~ 96131019 (-) False LOC110502509
TU236022 lncRNA upstream 6613 96135847 ~ 96136489 (-) True G208473
TU236026 lncRNA upstream 14223 96143457 ~ 96143656 (-) True G208477
TU236028 lncRNA upstream 21626 96150860 ~ 96151134 (-) True G208479
XM_036960073.1 mRNA downstream 34786 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 243512 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 406076 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 462688 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 495219 95628449 ~ 95631972 (-) False parietopsin
XM_036960080.1 mRNA upstream 1077 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 504607 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 517896 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 517896 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 517896 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 294829 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 440327 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 440327 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 517405 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 602964 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 4843 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 292632 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1287587 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1371938 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1489625 97618859 ~ 97619212 (-) True G209841

Expression Profile