RNA id: TU236021


Basic Information

Item Value
RNA id TU236021
length 396
RNA type TUCP
GC content 0.47
exon number 1
gene id G208472
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96134077 ~ 96134472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAtataaggaatgatggatggtgctaaatacagggaaattcttgagggaaacctgtttcagtcttccagagatttgagactgggacggaggttcaccttccagcaggacaatgaccctaagcatactgctaaagcaacacttgagtggtttaaggggaaacatttaaatgtcttggaatggcctagtcaaatcccagacctcaatccaattgagaatctgtggtatgacttaaagattgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaagaatgggcaaacatctcagtggctagatgtgccaagcttatagagacataccccaagagacttgcagctgtaatttctgcaaaaggtggctctacaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236018 lncRNA downstream 3058 96130271 ~ 96131019 (-) False LOC110502509
TU236019 lncRNA downstream 3196 96129727 ~ 96130881 (-) False LOC110502509
TU236016 lncRNA downstream 4843 96127191 ~ 96129234 (-) True G208468
TU236015 lncRNA downstream 6004 96127169 ~ 96128073 (-) False G208468
TU236017 lncRNA downstream 7240 96125952 ~ 96126837 (-) True G208469
TU236022 lncRNA upstream 1375 96135847 ~ 96136489 (-) True G208473
TU236026 lncRNA upstream 8985 96143457 ~ 96143656 (-) True G208477
TU236028 lncRNA upstream 16388 96150860 ~ 96151134 (-) True G208479
TU236031 lncRNA upstream 26792 96161264 ~ 96161502 (-) True G208482
TU236035 lncRNA upstream 33220 96167692 ~ 96167923 (-) True G208486
XM_036960073.1 mRNA downstream 41672 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 250398 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 412962 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 469574 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 502105 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 499369 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 512658 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 512658 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 512658 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 512658 96647130 ~ 96897073 (-) True LOC110500541
TU235579 other downstream 301715 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 447213 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 447213 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 524291 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 609850 95523968 ~ 95524227 (-) True G207959
TU236221 other upstream 287394 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1282349 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1366700 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1484387 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 2009848 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile