RNA id: TU236028



Basic Information


Item Value
RNA id TU236028
length 275
lncRNA type intronic
GC content 0.49
exon number 1
gene id G208479
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96150860 ~ 96151134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACAGTCTAGTCAGGTGAGATGTAACCAGGTGAGACCAGATACTGTACAGTCTAGTCAGGTGAGATGTAACCAGGTGAGACCAGCTACTGTACAGTCTAGTCAGGTGAGCTGTAACCAGGTGAGACCAGCTACTGTACAGCCTAGTCAGGTGAGATGTAACCAGGTGAGACCAGCTACTTTACAGCCTAGTCTGGTGCTCTGTAACCAGGTGAGACCAGATACTGTACAGCCTAGTCAGGTGAGATGAAACCAGGTGAGACCAGCTACTGTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236026 lncRNA downstream 7204 96143457 ~ 96143656 (-) True G208477
TU236022 lncRNA downstream 14371 96135847 ~ 96136489 (-) True G208473
TU236018 lncRNA downstream 19841 96130271 ~ 96131019 (-) False LOC110502509
TU236019 lncRNA downstream 19979 96129727 ~ 96130881 (-) False LOC110502509
TU236016 lncRNA downstream 21626 96127191 ~ 96129234 (-) True G208468
TU236031 lncRNA upstream 10130 96161264 ~ 96161502 (-) True G208482
TU236035 lncRNA upstream 16558 96167692 ~ 96167923 (-) True G208486
TU236036 lncRNA upstream 16934 96168068 ~ 96168342 (-) True G208487
TU236039 lncRNA upstream 20398 96171532 ~ 96171868 (-) True G208490
TU236042 lncRNA upstream 22494 96173628 ~ 96173889 (-) True G208492
XM_036960073.1 mRNA downstream 58455 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 267181 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 429745 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 486357 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 518888 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 482707 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 495996 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 495996 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 495996 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 495996 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 16388 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 318498 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 463996 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 463996 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 541074 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 270732 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1265687 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1350038 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1467725 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1993186 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile