RNA id: TU235916



Basic Information


Item Value
RNA id TU235916
length 300
lncRNA type intronic
GC content 0.50
exon number 1
gene id G208379
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96152525 ~ 96152824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCACCTGGTTACATCTCACCTGACTAGACTGTACAATACCTGTCCTCACCTGGTTACATCTCACCTGACTAGACTGTACAGTACCTGTCCTCACCTGGTTACATCTCACCTGACTAGGCTGTACAGTAGCTGGTCTCACCTGACCAGGCTGTACAGTAGCTGGTCTCACCTGGTTACATCTCACCTGACTAGGCTGTACAGTAGCTGGTCTCACCTGACTAGGCTGTACAGTAGCTGGTCTCACCTGGTTACAGCTCACCTGACTAGACTGTACAGTAACTGGACTCACCTGGTTACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235913 lncRNA upstream 9902 96142424 ~ 96142623 (+) True G208376
TU235911 lncRNA upstream 11977 96139931 ~ 96140548 (+) True G208374
TU235907 lncRNA upstream 25673 96126230 ~ 96126852 (+) True G208371
TU235903 lncRNA upstream 26772 96125508 ~ 96125753 (+) True G208369
TU235900 lncRNA upstream 29251 96122892 ~ 96123274 (+) True G208366
TU235917 lncRNA downstream 2863 96155687 ~ 96155942 (+) True G208380
TU235918 lncRNA downstream 3576 96156400 ~ 96156635 (+) True G208381
TU235921 lncRNA downstream 21379 96174203 ~ 96174494 (+) True G208384
TU235922 lncRNA downstream 23771 96176595 ~ 96176831 (+) True G208385
TU235936 lncRNA downstream 59922 96212746 ~ 96212961 (+) True G208396
XM_021577940.2 mRNA upstream 108955 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 141321 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 141321 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 264411 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 389382 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 818567 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 929111 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 933105 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 933118 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 1375883 97528707 ~ 97596323 (+) False LOC110500611
TU234200 other upstream 1446277 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1520258 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1590301 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1714843 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 2050653 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 74969 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 459605 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1333652 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1465793 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1545287 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile