RNA id: TU236031


Basic Information

Item Value
RNA id TU236031
length 239
lncRNA type intronic
GC content 0.43
exon number 1
gene id G208482
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96161264 ~ 96161502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctAACTCTTGTAGGTCCTGGGAAACCAAAACAGTTTGGTAATTGAATGGTGCTTCAAAGAACTGTATGTCAGAGACTAATGATGCTCTTTAGACTGATACTGTTCCATAGAAGGTTCCTTAAGGTCCAACTACACACAGTACAAAAACTCAGTTCGCTACAGGAGAGTATTTAGTCTCCTATCTAATGTTACCATGGCTCGTCCTACTGCTGCTTGCTaataggcaggtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236028 lncRNA downstream 10130 96150860 ~ 96151134 (-) True G208479
TU236026 lncRNA downstream 17608 96143457 ~ 96143656 (-) True G208477
TU236022 lncRNA downstream 24775 96135847 ~ 96136489 (-) True G208473
TU236018 lncRNA downstream 30245 96130271 ~ 96131019 (-) False LOC110502509
TU236019 lncRNA downstream 30383 96129727 ~ 96130881 (-) False LOC110502509
TU236035 lncRNA upstream 6190 96167692 ~ 96167923 (-) True G208486
TU236036 lncRNA upstream 6566 96168068 ~ 96168342 (-) True G208487
TU236039 lncRNA upstream 10030 96171532 ~ 96171868 (-) True G208490
TU236042 lncRNA upstream 12126 96173628 ~ 96173889 (-) True G208492
TU236043 lncRNA upstream 12704 96174206 ~ 96174433 (-) True G208493
XM_036960073.1 mRNA downstream 68859 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 277585 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 440149 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 496761 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 529292 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 472339 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 485628 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 485628 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 485628 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 485628 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 26792 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 328902 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 474400 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 474400 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 551478 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 260364 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1255319 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1339670 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1457357 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1982818 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile