RNA id: TU236063


Basic Information

Item Value
RNA id TU236063
length 466
lncRNA type intronic
GC content 0.40
exon number 1
gene id G208513
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96211172 ~ 96211637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgaaaggaggagcaggaggagcagtgccagagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgagggcccgacgtccacaggtggggttgtgcttacagcccaacaccgtgcaggatgtttggcatttgccagagaacaccaagattggcaaattcgccactggctccctgtgctcttcacagatgaaagcaggttcacactgagcacatgtgacagacatgacagagtctggagatgccgtggagaacgttctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236061 lncRNA downstream 2651 96208241 ~ 96208521 (-) True G208511
TU236058 lncRNA downstream 5314 96205650 ~ 96205858 (-) True G208508
TU236053 lncRNA downstream 19798 96191154 ~ 96191374 (-) True G208503
TU236046 lncRNA downstream 32852 96178077 ~ 96178320 (-) True G208496
TU236045 lncRNA downstream 33814 96177068 ~ 96177358 (-) True G208495
TU236071 lncRNA upstream 11133 96222770 ~ 96223012 (-) True G208521
TU236073 lncRNA upstream 12077 96223714 ~ 96223942 (-) True G208523
TU236075 lncRNA upstream 14946 96226583 ~ 96226849 (-) True G208525
TU236124 lncRNA upstream 101389 96313026 ~ 96313711 (-) True G208571
TU236150 lncRNA upstream 132191 96343828 ~ 96344057 (-) True G208593
XM_036960073.1 mRNA downstream 118767 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 327493 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 490057 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 546669 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 579200 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 422204 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 435493 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 435493 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 435493 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 435493 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 76700 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 378810 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 524308 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 524308 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 601386 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 210229 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1205184 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1289535 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1407222 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1932683 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile