RNA id: TU236124



Basic Information


Item Value
RNA id TU236124
length 592
lncRNA type intronic
GC content 0.37
exon number 2
gene id G208571
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96313026 ~ 96313711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAATTCGACTTGGATAAATGTTGGATAAATGTAGATAAACTTGAATTTTTTCACAAGGACTTACACGGGATACTAACCTCAACATCAAACCCTTCAAAATTCCATTCCTAAAACCTAGTATTTTGACAAAATGACCTGAATAGACTACTACTACCAAGGACAAGAAAaaaattaaagaaaaaaaatTCTAACAAACCGAAATCTGCAAAAGAAACACAATGGAACCTGGAACCTAAAATACCATCCAACACAAAACTGAGTGAGTAATATTCAGTCTGAACCTCTGGAGACAAAAAGTAAGCGACAATAAGCTCGAGGTACTTTTGTTATATAATGCTAAGTAAATAAGGCTACTAAGCTACCAAGCTACTAGGACAGAACAGATCTGGCTGCCACTTCAATAAGCTTGAGGTACTTTTGTTATATAATGCTAAGTAAATAAGGCTACTAAGCTACCAAGCTACTAGGACAGAACAGATCTGTCTGccacttcaattagcactgaagtgTAAAGTCAGATTTGTGAAAACTCTTAAGCCTGACAATGACAGGAGAGTTTCACACTCCCCCCACCACACCCAAATGCGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236075 lncRNA downstream 86177 96226583 ~ 96226849 (-) True G208525
TU236073 lncRNA downstream 89084 96223714 ~ 96223942 (-) True G208523
TU236071 lncRNA downstream 90014 96222770 ~ 96223012 (-) True G208521
TU236063 lncRNA downstream 101389 96211172 ~ 96211637 (-) True G208513
TU236061 lncRNA downstream 104505 96208241 ~ 96208521 (-) True G208511
TU236150 lncRNA upstream 30117 96343828 ~ 96344057 (-) True G208593
TU236153 lncRNA upstream 33491 96347202 ~ 96347807 (-) True G208596
TU236155 lncRNA upstream 36609 96350320 ~ 96350520 (-) True G208598
TU236156 lncRNA upstream 37933 96351644 ~ 96352242 (-) True G208599
TU236160 lncRNA upstream 42365 96356076 ~ 96356323 (-) True G208603
XM_036960073.1 mRNA downstream 220621 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 429347 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 591911 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 648523 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 681054 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 320130 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 333419 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 333419 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 333419 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 333419 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 178554 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 480664 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 626162 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 626162 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 703240 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 108155 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1103110 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1187461 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1305148 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1830609 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile