RNA id: TU236163


Basic Information

Item Value
RNA id TU236163
length 529
lncRNA type intronic
GC content 0.36
exon number 2
gene id G208606
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96358519 ~ 96359128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagccctgacctcaaccccatctaacacctttgggatgaattgaaacaccgactgtgagccaggcctaatcgctcaacatcactGCTCGACCTCActcatgctcttgtggctgaatggaagcaagtccgtgtaacggatgtgaaactgctagctagttagcggtggttgtggtaacggatgtgaaactgctagctagttagcggtggtggtggtaacggatgtgaaacggctagcttagttagcggtggtgcgcgctaaatagtgtttcaatcggtgacgtcacttgctctgagaccttgaagtagtggttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgatgcttcgtgggtgactgttgttgatgtgtgcagagggtccctggttcgcacccgggtatgggcgaggggacggtgtaaggttatactgttacatccgcgcagcaatgttccaacatctagtgggaagacttcccagaagagtggaggctgttatagcagcaaaggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236160 lncRNA downstream 2196 96356076 ~ 96356323 (-) True G208603
TU236156 lncRNA downstream 6277 96351644 ~ 96352242 (-) True G208599
TU236155 lncRNA downstream 7999 96350320 ~ 96350520 (-) True G208598
TU236153 lncRNA downstream 10712 96347202 ~ 96347807 (-) True G208596
TU236150 lncRNA downstream 14462 96343828 ~ 96344057 (-) True G208593
TU236164 lncRNA upstream 243 96359371 ~ 96359704 (-) True G208607
TU236168 lncRNA upstream 5269 96364397 ~ 96364649 (-) True G208610
TU236169 lncRNA upstream 5661 96364789 ~ 96365120 (-) True G208611
TU236174 lncRNA upstream 10307 96369435 ~ 96369743 (-) True LOC110502509
TU236190 lncRNA upstream 28123 96387251 ~ 96387473 (-) True G208629
XM_036960073.1 mRNA downstream 266114 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 474840 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 637404 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 694016 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 726547 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 274713 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 288002 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 288002 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 288002 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 288002 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 224047 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 526157 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 671655 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 671655 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 748733 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 62738 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1057693 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1142044 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1259731 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1785192 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile