RNA id: TU236168


Basic Information

Item Value
RNA id TU236168
length 253
lncRNA type intronic
GC content 0.37
exon number 1
gene id G208610
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96364397 ~ 96364649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacaaggctgtaatgtaacaaaatgtggaaaaagtcaaggggtctgaatattttccaaatgcactgtagatgcACACTCTTGCTTGCATCttgctgatatagggtgtaatcattagtccgtGTAAGAAAACATTTTTTAACAAGCTACAAGTGTGAAACGCGTTTCGGCTACCAGTGCATCTTTTTTATGGGGCACATTTATAAAAACTGTCATAAAACTGTTGTTTTATTAAGATGTGGAATGTAGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236164 lncRNA downstream 4693 96359371 ~ 96359704 (-) True G208607
TU236163 lncRNA downstream 5269 96358519 ~ 96359128 (-) True G208606
TU236160 lncRNA downstream 8074 96356076 ~ 96356323 (-) True G208603
TU236156 lncRNA downstream 12155 96351644 ~ 96352242 (-) True G208599
TU236155 lncRNA downstream 13877 96350320 ~ 96350520 (-) True G208598
TU236169 lncRNA upstream 140 96364789 ~ 96365120 (-) True G208611
TU236174 lncRNA upstream 4786 96369435 ~ 96369743 (-) True LOC110502509
TU236190 lncRNA upstream 22602 96387251 ~ 96387473 (-) True G208629
TU236333 lncRNA upstream 135168 96499817 ~ 96500344 (-) True G208765
TU236338 lncRNA upstream 139743 96504392 ~ 96504628 (-) True G208769
XM_036960073.1 mRNA downstream 271992 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 480718 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 643282 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 699894 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 732425 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 269192 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 282481 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 282481 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 282481 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 282481 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 229925 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 532035 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 677533 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 677533 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 754611 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 57217 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1052172 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1136523 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1254210 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1779671 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile