RNA id: TU236358



Basic Information


Item Value
RNA id TU236358
length 300
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G208789
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96531250 ~ 96531549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcaggccgggcgcagtgcacgctaaccaaggttgccaggggcacggtgtttcctccgacacattggtgcggccggCTTCCGGgctggatgcgcgctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcgaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactaacaattggacaccacgaaattggggagaaaaagggggtaaaaataaataaataaacagtctgatggccttgagatagaagctgtt

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236291 lncRNA upstream 10375 96520625 ~ 96520875 (+) True G208726
TU236288 lncRNA upstream 16479 96514566 ~ 96514771 (+) True G208723
TU236286 lncRNA upstream 17616 96513394 ~ 96513634 (+) True G208721
TU236284 lncRNA upstream 20288 96510714 ~ 96510962 (+) True G208719
TU236283 lncRNA upstream 21542 96509508 ~ 96509708 (+) True G208718
TU236388 lncRNA downstream 20773 96552322 ~ 96552592 (+) True G208809
TU236390 lncRNA downstream 21410 96552959 ~ 96553162 (+) True G208811
TU236398 lncRNA downstream 36315 96567864 ~ 96568814 (+) True G208819
TU236408 lncRNA downstream 54286 96585835 ~ 96594493 (+) True G208829
TU236412 lncRNA downstream 64108 96595657 ~ 96596455 (+) True G208833
XM_021577940.2 mRNA upstream 487680 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 520046 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 520046 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 643136 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 768107 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 439842 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 550386 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 554380 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 554393 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 997158 97528707 ~ 97596323 (+) False LOC110500611
TU235944 other upstream 302787 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 1825002 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1898983 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1969026 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 2093568 94402591 ~ 94437682 (+) True LOC110500139
TU236415 other downstream 80880 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 954927 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1087068 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1166562 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 1208512 97740061 ~ 97772765 (+) True G209636

Expression Profile