RNA id: TU236487



Basic Information


Item Value
RNA id TU236487
length 211
lncRNA type intronic
GC content 0.46
exon number 2
gene id G208898
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96742261 ~ 96742769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgttactgtgtctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttactgtggctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttagtgtgtctgtgtgtcagtgttagtgtgtctgtgtgtctgtgtgtcagtgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236438 lncRNA upstream 74344 96660130 ~ 96667917 (+) True G208855
TU236426 lncRNA upstream 96227 96642983 ~ 96646034 (+) True G208847
TU236419 lncRNA upstream 115000 96627031 ~ 96627261 (+) True G208840
TU236418 lncRNA upstream 115902 96626152 ~ 96626359 (+) True G208839
TU236413 lncRNA upstream 135530 96606501 ~ 96606731 (+) True G208834
TU236503 lncRNA downstream 30441 96773210 ~ 96774003 (+) True G208912
TU236570 lncRNA downstream 134761 96877530 ~ 96878953 (+) True G208975
TU236645 lncRNA downstream 276903 97019672 ~ 97024303 (+) False G209036
TU236646 lncRNA downstream 276903 97019672 ~ 97024303 (+) True G209036
TU236675 lncRNA downstream 285818 97028587 ~ 97029023 (+) True G209042
XM_021577940.2 mRNA upstream 698691 96034220 ~ 96043570 (+) True LOC110500533
XM_036960062.1 mRNA upstream 731057 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA upstream 731057 96001330 ~ 96011204 (+) False LOC110500522
XM_036934469.1 mRNA upstream 854147 95885587 ~ 95888114 (+) True LOC118936882
XM_036960057.1 mRNA upstream 979118 95750989 ~ 95763143 (+) True LOC110500485
XM_036960132.1 mRNA downstream 228622 96971391 ~ 97028188 (+) True LOC110500557
XM_036960137.1 mRNA downstream 339166 97081935 ~ 97085041 (+) True LOC110500585
XM_021578027.2 mRNA downstream 343160 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA downstream 343173 97085942 ~ 97087755 (+) True LOC110500594
XM_036960160.1 mRNA downstream 785938 97528707 ~ 97596323 (+) False LOC110500611
TU236415 other upstream 128802 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 513798 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2036013 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 2109994 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 2180037 94557169 ~ 94562224 (+) True G206850
TU237298 other downstream 743707 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 875848 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 955342 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 997292 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 1214475 97957244 ~ 97957836 (+) False G209759

Expression Profile