RNA id: TU237013



Basic Information


Item Value
RNA id TU237013
length 930
lncRNA type intronic
GC content 0.48
exon number 2
gene id G209346
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96839145 ~ 96840206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctctctctctccctctcgttctctctctctctctctccctctcgttctctctccctctcgtgaATTGCAGGGTCAAATCTGGACATAGGACACGTGTTGGGACTGTGTAATATAGATTTGTTTAAATAGTCTGAGCAGATTTGGACCTCAGTAACTAAGCATATCTGTAACTTTTGCTACTGGCTACctcttttttaaaatgttctttttatttcacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcattcacaactgcgacctggccaagataaagaaaagcagcacgacacaaacaacaacacagagttacacatgggataaacaataaacaagccaataacacaataaacaagccaataacacaataaacaagccaataacacagtagaaaaaataaagttGCTGCATCTTGGGTAAATAAAACCACAGGAGTTTGGGTTGTTGTGTTTGGTTGTTGTGACCATATGCATTGTGGGTTGCAGACTTTGTAAACTGAAATCTGTAACATATCAGactatgtttttatatatattttttaaaatattttagttTTAATTAACTTTGTCCTGCATTGTTGGAGTTCGGAGCTCAAGAATTTCACTGCATTCTGTAGTTATATCTGCAACCCTGTACATTAAATGCTCTAATCTATTGTCATGTAATTTGGGAGTTCTGGTATGAAGGAATTCTAGCTGATGCCGAAGGATGCACTTTTCATAAGTTAGAATATCGCCTGAGGATCCACATCACACTACATGATCAGCACATTGAGTGCCAGAAGGAGCCCGGCTGGTAAACATTAAAACGAAACAAATTATGAGCCAAATTGTTTGTTTGTTGCTTTTATGGATTTTGTCTTGTTGattttttgttctatgttgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236956 lncRNA downstream 141432 96696937 ~ 96697713 (-) True G209298
TU236939 lncRNA downstream 179928 96654622 ~ 96659217 (-) True G209282
TU236877 lncRNA downstream 193111 96627285 ~ 96646034 (-) True G209226
TU236923 lncRNA downstream 219914 96617498 ~ 96619231 (-) True G209267
TU236910 lncRNA downstream 241365 96597471 ~ 96597780 (-) True G209254
TU237016 lncRNA upstream 5545 96845751 ~ 96846592 (-) True G209348
TU237017 lncRNA upstream 6528 96846734 ~ 96847325 (-) True G209349
TU236874 lncRNA upstream 37332 96877538 ~ 96878868 (-) True G209223
TU237045 lncRNA upstream 116447 96956653 ~ 96958015 (-) True G209373
TU237101 lncRNA upstream 245834 97086040 ~ 97086516 (-) True G209416
LOC110500576 mRNA downstream 198741 96633841 ~ 96640404 (-) True LOC110500576
XM_036960080.1 mRNA downstream 468939 96130311 ~ 96370206 (-) False LOC110502509
XM_036960073.1 mRNA downstream 746740 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 955466 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 1118030 95703359 ~ 95721115 (-) True LOC110500466
XM_036960120.1 mRNA upstream 179385 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA upstream 187980 97028186 ~ 97077900 (-) True pik3c2g
XM_036960153.1 mRNA upstream 249001 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 654138 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 781800 97622006 ~ 97622184 (-) False LOC118944190
TU236221 other downstream 416921 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 704673 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1006783 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1152281 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 576615 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 660966 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 778653 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1304114 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 2078242 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile