RNA id: TU236874



Basic Information


Item Value
RNA id TU236874
length 898
lncRNA type intronic
GC content 0.45
exon number 6
gene id G209223
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96877538 ~ 96878868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAGAGGCTTGATACATATGGCCCCTGATCCTACTCCAAGATGCTGTTTTAAGTACGTGCTCAGGAAAGATGCACAGAATGTATTCTGAATGTTCATTCTCCAGGGTTCAGGATATAGACCTAGATAGTGGTTCATTCTCCAGGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCATTCTCCAGGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCATTCTCCAGGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCATTCTCCAGGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAATAAATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCATTCTCCAGGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATATGCCTAGATAGGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGGCCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATAGTGGTTCAGTATATAGACCTAGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237017 lncRNA downstream 30213 96846734 ~ 96847325 (-) True G209349
TU237016 lncRNA downstream 30946 96845751 ~ 96846592 (-) True G209348
TU237013 lncRNA downstream 37332 96839145 ~ 96840206 (-) True G209346
TU236956 lncRNA downstream 179825 96696937 ~ 96697713 (-) True G209298
TU236939 lncRNA downstream 218321 96654622 ~ 96659217 (-) True G209282
TU237045 lncRNA upstream 77785 96956653 ~ 96958015 (-) True G209373
TU237101 lncRNA upstream 207172 97086040 ~ 97086516 (-) True G209416
TU237110 lncRNA upstream 229680 97108548 ~ 97109049 (-) True G209422
TU237133 lncRNA upstream 287238 97166106 ~ 97166479 (-) True G209443
TU237165 lncRNA upstream 366609 97245477 ~ 97248595 (-) True G209474
LOC110500576 mRNA downstream 237134 96633841 ~ 96640404 (-) True LOC110500576
XM_036960080.1 mRNA downstream 507332 96130311 ~ 96370206 (-) False LOC110502509
XM_036960073.1 mRNA downstream 785133 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 993859 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 1156423 95703359 ~ 95721115 (-) True LOC110500466
XM_036960120.1 mRNA upstream 140723 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA upstream 149318 97028186 ~ 97077900 (-) True pik3c2g
XM_036960153.1 mRNA upstream 210339 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 615476 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 743138 97622006 ~ 97622184 (-) False LOC118944190
TU236221 other downstream 455314 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 743066 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1045176 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1190674 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 537953 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 622304 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 739991 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1265452 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 2039580 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile