RNA id: TU237101



Basic Information


Item Value
RNA id TU237101
length 446
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G209416
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97086040 ~ 97086516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACCCACCAGCCCAGACAGCACAACAGATCTGTGACCAGGCTAGAATTGGAGTGGTATTGGAATGAAACTGCTGATTGGTAACCCACCAGTCTAATTAGTCAATTGGAACAAGAGCTTGTTGGATAGGTTGCTGACTTGCAATTAAAAAGGAAAATAGCAACTTGTCAAACAAACCAGTCATGATTGCACGAAGTTCCAGGTATATCCTAGTAAGGAACCTTCTAGTCTCAGTTTATCTAAAAGACAGGTTGAAAGCCTTGTATGTCTTGCTCATGCAATGGCAATATGTGGGATGAGGACTTACCTGCCCATTCTTACGACTCTGGGGTTGAGAGGAATTTCAAACTGGATACAACAGGTGGCGTACAATGGAGCTGCTCTGTGTCCCAACACTTACTGCTGGTCGAACCGGTACCATCTAACCTCGAACCAATTAACCACACCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237045 lncRNA downstream 128025 96956653 ~ 96958015 (-) True G209373
TU236874 lncRNA downstream 207172 96877538 ~ 96878868 (-) True G209223
TU237017 lncRNA downstream 238715 96846734 ~ 96847325 (-) True G209349
TU237016 lncRNA downstream 239448 96845751 ~ 96846592 (-) True G209348
TU237013 lncRNA downstream 245834 96839145 ~ 96840206 (-) True G209346
TU237110 lncRNA upstream 22032 97108548 ~ 97109049 (-) True G209422
TU237133 lncRNA upstream 79590 97166106 ~ 97166479 (-) True G209443
TU237165 lncRNA upstream 158961 97245477 ~ 97248595 (-) True G209474
TU237173 lncRNA upstream 175178 97261694 ~ 97265605 (-) True G209478
TU237185 lncRNA upstream 202335 97288851 ~ 97290520 (-) True G209486
XM_036960120.1 mRNA downstream 8140 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA downstream 8140 97028186 ~ 97077900 (-) True pik3c2g
XM_036960096.1 mRNA downstream 188967 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA downstream 188967 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA downstream 188967 96647130 ~ 96897073 (-) False LOC110500541
XM_036960153.1 mRNA upstream 2691 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 407828 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 535490 97622006 ~ 97622184 (-) False LOC118944190
LOC118944213 mRNA upstream 539265 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 561345 97647861 ~ 97648048 (-) True LOC118944196
TU236221 other downstream 663816 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 951568 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1253678 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1399176 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 330305 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 414656 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 532343 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1057804 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1831932 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile