RNA id: TU237314


Basic Information

Item Value
RNA id TU237314
length 2082
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G209590
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97490157 ~ 97599263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaggggtctgaatacccttgactttccacattttgttacgttacagaattATGCTACATTttcttttcccctcatcaatctacacacaataccccataatgacatcacaataccccataatgacatcacaataccccataatgacatcacaataccccataatgacaaagcaaaaacagtaagtattcaaccatttgctatgagactggaaattgagctcaggtgaatcctgtttccattgataacccttgagatgtttctagaacttgattggagtccacctgtggtaaagtcaATGGATTGGAcaatatttggaaaggcacacacctgtctatatatggtcccacagttgacagtgcatgtcagaccaaaaatcaagccatgaggtcgaaggaattgtccgtagagctctgagacaggattgtgtcgaggcaccaaaacatgcagcattgaaggtccccaagaacacagtggcctccatcattctgaaatggaagaagtttggtatgtccttgagtgacccagccagagcccagacttgaacccaatcaaacatctctgaaaagagacctgaaaatagctgtgcagcaacactccccatccaacctgacagagcttgagaggatctgcagagaaaaatgggagaaactccccaaatacacgtgtttcaagcttgtagcgtcatacccaagaagactcgaggctttaatcgctgccaaagtagtgaggaaagggtctgaatactgatgtaaatgtaatatttcagttttgtatttttttttgttataaatttgcaaacttttctaacaacctgttttggctatgtcattatggggcattgtgatgtcattatgaggtattgtgatgtcattatggggcattgtgtgtagatttatgagggacAAAAATGATtgaatccatttttagaataaagctgtaacgtaacaaaatgtgggaaaagtcaaggggtctgaatacttcctgaatgtgCTGTATACATTGCATCCTTAGACACTGACCTTGTAATAAATCCCTAATGCTAACACATTAAGCAACACTAGATACTGTATATTCGTGTCATTTCCTGATTATGTGTTTATGTTTTACTTGTGAAAAGAAGGAAATCACCTAATTCTCATGTGATATTGGGTGTCTTATAACATAATGGGTGAACTCTTACAAACAAAACATCCTccttcctcaatAACCCTCTTTACCAGAACACTGTTGTCTAACGTGAGTTGCTACGGTTACTGTGTATAGATATTCaccggagagagaaaaaaaaatggaagTTTTACAAAGTTTGTTGGGGTGTAAACATGTATATTCTAAAATATCAAAGAAGCACTAATGTAGGAATTCATTTTGTAACTCCATTGCAAGCGTATGCTCAGCTCGATTTACACAGTACTTCATGAACTTGTGTCTCAATATTTTGTAGTTTATGGTATGGTATATTCTTCTTCACTGTGATGGGGTGAATGAATGACTGTACGTCTCCTTTGTATCTTGTAGCTGaggggtgaatgtgtgtgtgaatgagtgtgtgtatgggatATGTGTCTGTCCAcacgtcactgtgtgtgtgtttaatgcacCTTTTTAGTGTACCAACACACtggcctcatctctctctctctctctctctctctctctctctctctatgtgtttaTCATTCATTATGGGGACATACTGCATACTAAGTGTGTAGAGGGTCATATATAATAATCTATTAATTGATTGGTTGAAAAATTGATAAGGCCTGATGAGGTAATTCTAGTCCTATACCTCCATCGTGAgttaggaggaggaagaggaggaggtgtggtgagCTTTAGTGTTAATACTGGAGAAAGGCCTGTCCCAGTCTCCTCTCTATATGTACcactaatgtaaatgtaaatatcaAAACagataccaaacattaagaaacTATAAGGAAGAGAACGGTAACCGCaatgaaataaataaagaagAATATACGAGTATGATTAATAAAGGTTTTCACGTTAGAACAACGGTGTGTGTCCTGTGTTTTTATCTCATTGGTTTGGTGGTCCCTCTGTTATAGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237290 lncRNA upstream 52442 97472523 ~ 97472827 (+) True G209578
TU237289 lncRNA upstream 53981 97470727 ~ 97471288 (+) True G209577
TU237242 lncRNA upstream 131309 97393748 ~ 97393960 (+) True G209543
TU237233 lncRNA upstream 136828 97388169 ~ 97388441 (+) True G209534
TU236871 lncRNA upstream 137265 97387671 ~ 97388004 (+) True G209220
TU237307 lncRNA downstream 5935 97605198 ~ 97606034 (+) False LOC110533938
TU237301 lncRNA downstream 6099 97605362 ~ 97606034 (+) False LOC110533938
TU237305 lncRNA downstream 6099 97605362 ~ 97606146 (+) False LOC110533938
TU237306 lncRNA downstream 6099 97605362 ~ 97606240 (+) False LOC110533938
TU237308 lncRNA downstream 6099 97605362 ~ 97606533 (+) False LOC110533938
XM_021578027.2 mRNA upstream 437514 97085929 ~ 97087755 (+) False LOC110500594
XM_021578017.2 mRNA upstream 437514 97085942 ~ 97087755 (+) True LOC110500594
XM_036960137.1 mRNA upstream 440228 97081935 ~ 97085041 (+) True LOC110500585
XM_036960132.1 mRNA upstream 497081 96971391 ~ 97028188 (+) True LOC110500557
XM_021577940.2 mRNA upstream 1481699 96034220 ~ 96043570 (+) True LOC110500533
XR_002475063.2 mRNA downstream 5885 97605148 ~ 97606655 (+) False LOC110533938
LOC118944222 mRNA downstream 21294 97620557 ~ 97620665 (+) True LOC118944222
LOC118944205 mRNA downstream 29014 97628277 ~ 97628490 (+) True LOC118944205
XM_036960296.1 mRNA downstream 34378 97633641 ~ 97676623 (+) False LOC110512361
XM_036960315.1 mRNA downstream 34389 97633652 ~ 97640022 (+) False LOC110512361
TU237298 other upstream 38497 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 911810 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1296806 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2819021 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 2893002 94631829 ~ 94632267 (+) True G206908
TU237326 other downstream 19354 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 98848 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 140798 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 357981 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1097905 98697168 ~ 98700392 (+) True G210408

Expression Profile