RNA id: TU237629


Basic Information

Item Value
RNA id TU237629
length 2769
lncRNA type intronic
GC content 0.46
exon number 2
gene id G209821
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97535997 ~ 97540324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAATgtaacccaacctgacctaatGTAATCCAACCAAACCTGACCTAATgtaacccaacctgacctaatGTAATCCAACCAAACCTGACCTAATGTAACCCAACCAAACCTGACCTAATGTAATCCAACCTGACCTAATGTAATCCAACCAAACCTTACCTAATgtaacccaacctgacctaatgtaacccaacctgacctaatgtaacccaacctgacctaatGTAACCCAACCTGACCACACCTAATgtaacccaacctgacctaatgtaacccaacctgacctaatgtaacccaacctgacctaatGTAACCCAACCAAACCACACCTAATGTAACCAAACCTGACCTAATGTAACCCAACCAAACCACACCTAATGTAACCAAACCACACCTAATgtaacccaacctgacctaatGTACACCAACCTGACCTAATGTAACCCAACCTgacccaacctaacccaaccaaacctgacctaatctaacccaacctgacctaatctaacccaacctgacctaatctaacccaacctgacctaatcTAACCCAACTGACCTAATCTAACCCAACCTGACATAATCTAACCCAACCTGACCGAACTAATCCAACCTGACCTAATCTAACCCAACCTGACATAATctaacccaacctgacctaatcTAACCCGACCTGACCCAACCTAACAAAACCAGACCTGATATAACCAAACCTGACCTAAACcaacccaacctgacctaatcTAACCCAACGAAAACTGACCTaatctaacccaacccaacctgacctaatctaacccaacccgacctgacctaaccaaaaccaAACCTGACCTAATCTAACACAACCTGTCCTAATCTAACACAACCCGACCTGACCTAACCCAAACCAAACCTGACCTAATCTAAAACAACCTGTCCTAATCTAACACAACCCGACCTGACCTAATTTAACCAAACCTGACCTAATctaacccaacctgacctaatcTAACCAAACCCAACCAACCTgacctaacccaacccaacctgacttaatctaacccaacccaacctaacccaaccaAACCTGACGTAATCTAACCCAATACGACCTGACCTAACCTAACCTACCCCAACCAAACCTGACCTAATctaacccaacctgacctaatcTAACCCAATACGACCTGACCTGAAATAACCTAACCCAACCAAACCTAACCCAACCTACCTAATCTAACCCAACCCGACCTGACCGAACCTAACCCAACCAAACCCAACCCAACCTCACCTAACCCAACACAACCTGACCTAATCTAATCTAACCGAACCCGACATGACCTAATCTAACCCAATGCAACCTGACCTAATctaacccaacctgacctaacctaacccaaaccaacctgACCAAATCTAACCAAAACTGACCTAATCTAACCCAATCCAACCCAAACTGACCTAATCAAACCTGACCTaatctaacccaacccaacctgacctaatcAAACCCAACCTGACCTGACCAAACATGATCTAACCAAACCTGACCTaatctaacccaacccaacccgacctaacctaacccaacctgacccaatctaacccaacccaacatgatctaacctaacccaacctgacctaatcTAACCAAACCTGACctaacccaacctgacctaatctaaccgaacctgacctaatctaaccctacccaacctgacctaacctaacccaaacccaacctgacctaatcTAACCAAACCTGACCTAACCCAACCTAATctaacccaacctgacctaatcCAACCCAACCTGACCTAACCTAACTCAATCTGCCCTAATCTACCCGAACCAAACCTGAGCCaatctaacccaacccaacctgacCTAAAATAACCAAACCTGACCCAACCTAATCTAGAGCAAACAAACCTGACCTaatctaacccaacccaacctaatCTAACCCTACCCAACCTGACCTAACCTAACCCAAACACAACCTGACCTAATCTAACCAAACCAAACCTgacctaacccaacccaacctaatctaacccaacctgacctaatccaacccaacctgacctaatcTAACTCAACCTGCCCTAATCTACCCGAACCAAACCTGACCCaatctaacccaacccaacctgacctaatACAACCAAACCTGACCCAACCTAATCTAAAGCAAACAAACCTGACCTaatctaacccaacccaacctgacctaacccaacctgacctaaCCTAACCCAACCAATCCTGACCTaatctaacccaacccaacctgacCTAGCCCAAACTGACCTAATctaacccaacctgacctaacctaacccaacctgacctaatcTAACCAAACCAAACCTGACCTAATCTAACCGTACCTGACctaacccaacctgacctaatcTAACCCAACCCTACCTGACCTaatctaacccaacccaacctgacctaatccaacccaacctgacctaatccaacccaacctgacctaacccaacctgacctaatcTAATCTAACCGAACCAAACCAGACCTAATctaacccaacctgacctaatcTAACCGAACCAAACCAAACCTGACCTaatctaacccaacccaacctgacctaatcTAACCCGACCTGACCTAATCCAACCCAACCCGACCTAACCTGACCTAATctaacccaacctgacctaatATAACCCAACCTAATataacccaacccaacctgacCTAACCCAACCTactctaacccaacccaacctgacctaacctaacccaacccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237626 lncRNA downstream 2820 97532657 ~ 97533177 (-) True G209818
TU237300 lncRNA downstream 46047 97489715 ~ 97489950 (-) True G209588
TU237297 lncRNA downstream 55226 97480567 ~ 97480771 (-) True G209585
TU237295 lncRNA downstream 59830 97475795 ~ 97476167 (-) True G209583
TU237291 lncRNA downstream 63124 97472634 ~ 97472873 (-) True G209579
TU237690 lncRNA upstream 55404 97595728 ~ 97599133 (-) False G209874
TU237691 lncRNA upstream 55404 97595728 ~ 97599133 (-) False G209874
TU237694 lncRNA upstream 55404 97595728 ~ 97599133 (-) False G209874
TU237695 lncRNA upstream 55404 97595728 ~ 97599133 (-) False G209874
TU237698 lncRNA upstream 55404 97595728 ~ 97599133 (-) False G209874
XM_036934797.1 mRNA downstream 39499 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 148044 97089207 ~ 97387953 (-) False LOC110502515
XM_036960120.1 mRNA downstream 458097 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA downstream 458097 97028186 ~ 97077900 (-) True pik3c2g
XM_036960116.1 mRNA downstream 638924 96647130 ~ 96897073 (-) True LOC110500541
LOC118944190 mRNA upstream 81682 97622006 ~ 97622184 (-) False LOC118944190
LOC118944213 mRNA upstream 85457 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 107537 97647861 ~ 97648048 (-) True LOC118944196
XM_036960269.1 mRNA upstream 111882 97652206 ~ 97689832 (-) False LOC118943865
XM_036960208.1 mRNA upstream 114827 97655151 ~ 97660464 (-) True LOC118943862
TU237607 other downstream 33603 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 118809 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1113773 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1401525 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1703635 95829374 ~ 95832362 (-) True G208077
TU237655 other upstream 78535 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 603996 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1378124 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1402150 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1485408 99025732 ~ 99026118 (-) True G210765

Expression Profile