RNA id: TU237701


Basic Information

Item Value
RNA id TU237701
length 2840
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G209874
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97595728 ~ 97599133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTTCCTTATAgtttcttaatgtttggtatctGTTTtgatatttacatttacattagtgGTACATATAGAGAGGAGACTGGGACAGGCCTTTCTCCAGTATTAACACTAAAGctcaccacacctcctcctcttcctcctcctaacTCACGATGGAGGTATAGGACTAGAATTACCTCATCAGGCCTTATCAATTTTTCAACCAATCAATTAATAGATTATTATATATGACCCTCTACACACTTAGTATGCAGTATGTCCCCATAATGAATGAtaaacacatagagagagagagagagagagagagagagagagagagatgaggccaGTGTGTTGGTACACTAAAAAGgtgcattaaacacacacacagtgacgtgTGGACAGACACATatcccatacacacactcattcacacacacattcacccctCAGCTACAAGATACAAAGGAGACGTACAGTCATTCATTCACCCCATCACAGTGAAGAAGAATATACCATACCATAAACTACAAAATATTGAGACACAAGTTCATGAAGTACTGTGTAAATCGAGCTGAGCATACGCTTGCAATGGAGTTACAAAATGAATTCCTACATTAGTGCTTCTTTGATATTTTAGAATATACATGTTTACACCCCAACAAACTTTGTAAAActtccatttttttttctctctccggtGAATATCTATACACAGTAACCGTAGCAACTCACGTTAGACAACAGTGTTCTGGTAAAGAGGGTTattgaggaaggggggggggggggggggggggggggtgggcggATAAGGAGGATGTTTTGTTTGTAAGAGTTCACCCATTATGTTATAAGACACCCAATATCACATGAGAATTAGGTGATTTCCTTCTTTTCACAAGTAAAACATAAACACATAATCAGGAAATGACACGAATATACAGTATCTAGTGTTGCTTAATGTGTTAGCATTAGGGATTTATTACAAGGTCAGTGTCTAAGGATGCAATGTATACAGcacattcaggaagtattcagaccccttgacttttcccacattttgttacgttacagctttattctaaaaatggattcaATCATTTTTgtccctcataaatctacacacaatgccccataatgacatcacaatacctcataatgacatcacaatgccccataatgacatagccaaaacaggttgttagaaaagtttgcaaatttataacaaaaaaaaatacaaaactgaaatattacatttacatcagtattcagaccctttcctcactactttggcagcgattaaagcctcgagtcttcttgggtatgacgctacaagcttgaaacacgtgtatttggggagtttctcccatttttctctgcagatcctctcaagctctgtcaggttggatggggagtgttgctgcacagctattttcaggtctcttttcagagatgtttgattgggttcaagtctgggctctggctgggtcactcaaggacataccaaacttcttccatttcagaatgatggaggccactgtgttcttggggaccttcaatgctgcatgttttggtgcctcgacacaatcctgtctcagagctctacggacaattccttcgacctcatggcttgatttttggtctgacatgcactgtcaactgtgggaccatatatagacaggtgtgtgcctttccaaatattgTCCAATCCATtgactttaccacaggtggactccaatcaagttctagaaacatctcaagggttatcaatggaaacaggattcacctgagctcaatttccagtctcatagcaaatggttgaatacttactgtttttgctttgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgtgtagattgatgaggggaaaagaaAATGTAGCATaattctgtaacgtaacaaaatgtggaaagtcaaggggtctgaaaactttccgaatgcactgtacgctTTCAAATGTGACTGtctacatgagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgagtgtgtgtctgagtgtgtgagtgtgtgtctgagtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgtgtgtctgtgtgtgtgtgtgtctgagtgtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgtgtgtgtgtgtctgagtgtgtgtctgagtgtgtgtctgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgtctgagtgtgtgtgtgtgtgtgtgttttctctcactACAATACGTGATTTCAAGAACAATAATTCAACCCAGTCTTCTTCATCCATATTCTTGCAGATAATCCATACGTTTTCTGTTGGTCAGTCTCTGTCCCCGTCTTGGTCGATGATCGGCTGTGTGAAGATTGTCTTGTCTCTGCTGGGGTTCCTAGGGGTTCAGTGATAGTGGAATAgtgtggaggtagagagactgtAGGACTGTGAGCAGGGCCAATATAATAGAGATGTACATATCATTGGCAGATCCAGCATAGACTAGAAGGTGAgaactagaatacagtacatgtGTGAATGAATGGGAGGCATCTGGCTACATagcatttctctccctctctcctgtctgtttcGCTCACTCATtgtccacctctctttctcttttactctcttctcctctcgatctctctcttctctctctcacacagccatGGTGTGCCAGTGTCGTCCTCTTCTGGGGGATGATGGGTAAAACTCTGGAGCGTGATGATGAAAGTTACACATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237604 lncRNA downstream 31805 97491227 ~ 97563923 (-) True G209799
TU237629 lncRNA downstream 55404 97535997 ~ 97540324 (-) True G209821
TU237626 lncRNA downstream 62551 97532657 ~ 97533177 (-) True G209818
TU237300 lncRNA downstream 105778 97489715 ~ 97489950 (-) True G209588
TU237297 lncRNA downstream 114957 97480567 ~ 97480771 (-) True G209585
TU237728 lncRNA upstream 226 97599359 ~ 97599597 (-) True G209881
TU237730 lncRNA upstream 5024 97604157 ~ 97604377 (-) True G209883
TU237711 lncRNA upstream 10383 97609516 ~ 97612103 (-) True G209875
TU237673 lncRNA upstream 18533 97617666 ~ 97618024 (-) True G209858
TU237681 lncRNA upstream 20662 97619795 ~ 97646274 (-) True G209866
XM_036934797.1 mRNA downstream 99230 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 207775 97089207 ~ 97387953 (-) False LOC110502515
XM_036960120.1 mRNA downstream 517828 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA downstream 517828 97028186 ~ 97077900 (-) True pik3c2g
XM_036960116.1 mRNA downstream 698655 96647130 ~ 96897073 (-) True LOC110500541
LOC118944190 mRNA upstream 22873 97622006 ~ 97622184 (-) False LOC118944190
LOC118944213 mRNA upstream 26648 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 48728 97647861 ~ 97648048 (-) True LOC118944196
XM_036960269.1 mRNA upstream 53073 97652206 ~ 97689832 (-) False LOC118943865
XM_036960208.1 mRNA upstream 56018 97655151 ~ 97660464 (-) True LOC118943862
TU237607 other downstream 93334 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 178540 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1173504 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1461256 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1763366 95829374 ~ 95832362 (-) True G208077
TU237655 other upstream 19726 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 545187 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1319315 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1343341 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1426599 99025732 ~ 99026118 (-) True G210765

Expression Profile