RNA id: TU237711


Basic Information

Item Value
RNA id TU237711
length 2095
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G209875
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97609516 ~ 97612103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtaggacctacataatgttatcaggtatatGCTGAATGTCCCCCCCCCCGTAGGACCTacataatgttatcaggtatatgctgaatgtcccccccccccccgtaggacctacataatgttatcaggtatatgctgaatgtcccccccccccgtaGGACCcacataatgttatcaggtataaTCAACACAGTCACAATACCAGAGCTAGTGTTATGTCTTGTAAAACCCAGAGAGTAAATAGTACTGTGAGGAGCACGTTTTTCCATACAGGCATTTGTCTATGGAATAGCCTTCCGTTGAAGATCAAGCAagcaaaaaaatagttttaaaaatcaGCCAAAGGTTTTCATTTGTACAAGGTTGTCTAAGTCAGAGAAACCACCCCACTGCCCCTTGTGCCCCTACTGCTGGTGAGGTGTATTTATTTGAAGGATCGGTATGATGTGCAATTAATAAATTGTTTTAATGTGAAATGAATATGGttgatttttaaggttagggattaagtGCTGTGAATAGAGCCACTTTTTAGGATGCCAATATAAATGAATGTATTGATGGTTGTTTGTAATTTTGTCTTTTAATCATTATATGTGTTATTGTTATTACAATATTGTTATTACCATCGAGAACCACCATGGAAACAAACATTTTAATGAATACTTTCAAGTGATATCCTCTACGTCCACATTGTACATTTTCTTGTATATGTCTGTTACCTAAAATAAATTCAATTCaacccctcccgcatctgaactggctacatAGAGGGCAAGGCATGATCAGAGGTGAGCGGTCATTtgtaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgatccaaggtcagttttgcatttcaccttcTGATTATTATGATGACTAACAAtgttagaataaaaaataaaaacaaggtttaaacatgctctctctctctttctccctccatctgtctcgtctgcaggtatgttttgatgtgagagaggatgccaaaCCCCAGTCccatcatcgccacctcacccgctcttaagataacctttgGGCCGACTGggagcccaaggctggttaggagacaccactagagacagACATTATTATGTAATTGTTGGGAACtaagagaatattagggtagcactgtggttcattaatcatatgctgtcttccctgctcctctgttcttacctctttccctttctgtcttttacacctctccctcccatcctctgttcttacctctctccctcccctctttcttcctctgttcttacctctttccctttctgtcttttacacctctccctcccatcctctgttcttacctctctccccacctcctctttcttcctctgtttttgttaatgcacaccagatgtgcattgaagtacagattgaacttgtttATAATATAAAATtacaattataatatttatagtgcatgtattatgtattgttAACACTTGGATTAttaacttctttcaataaagtgtttcacattctctactggttgaaattaagtctaTCGTTTGATGAAATACTACACCTATCCTGTGTTTATCTGTCAGAGTCTATCTAGAAAATAGCGAAGGAGTCAGACGCACAAACATAAATGGAAActagagggttaaataaggaacataattatgagatgggaaccaggtgtataaacagacaaaacaaaaggaaaaattaaacatggatcggtggcagcaagaaagccggtgacgttgaccaccgaacgccgcccgaacaaggagggaACAACTTTGGTGGAAGTCTTGACAGTACCCCTCCCTTGACGTGCGGCTCCAGCAgtgcgccgacaccggcctctgGGATGACCCGGGGGACGAgacgcagggcgatccggatggagtcGGTGAAATTCCTGGAGTAACAATGGGTCCAGGATGTCCCCCACTggtacccagcatctctcctctgggCCGTACCCGTCCCACTTCACGAGGTACTCTCGCCCGACGTCTTGAGTCcatgccggggccccctcgatatCCAGAAGGGGTGGAgtaacctcccgcacctcagactgctggagcggaccagccaccacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237730 lncRNA downstream 5139 97604157 ~ 97604377 (-) True G209883
TU237728 lncRNA downstream 9919 97599359 ~ 97599597 (-) True G209881
TU237705 lncRNA downstream 10383 97595728 ~ 97599133 (-) False G209874
TU237673 lncRNA upstream 5563 97617666 ~ 97618024 (-) True G209858
TU237681 lncRNA upstream 7692 97619795 ~ 97646274 (-) True G209866
TU237645 lncRNA upstream 9672 97621775 ~ 97639609 (-) False LOC118944190
TU237646 lncRNA upstream 9672 97621775 ~ 97675000 (-) True LOC118944190
TU237679 lncRNA upstream 14220 97626323 ~ 97690421 (-) True LOC118943865
XM_036934797.1 mRNA downstream 113018 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 221563 97089207 ~ 97387953 (-) False LOC110502515
XM_036960120.1 mRNA downstream 531616 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA downstream 531616 97028186 ~ 97077900 (-) True pik3c2g
XM_036960116.1 mRNA downstream 712443 96647130 ~ 96897073 (-) True LOC110500541
LOC118944190 mRNA upstream 9903 97622006 ~ 97622184 (-) False LOC118944190
LOC118944213 mRNA upstream 13678 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 35758 97647861 ~ 97648048 (-) True LOC118944196
XM_036960269.1 mRNA upstream 40103 97652206 ~ 97689832 (-) False LOC118943865
XM_036960208.1 mRNA upstream 43048 97655151 ~ 97660464 (-) True LOC118943862
TU237607 other downstream 107122 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 192328 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1187292 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1475044 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1777154 95829374 ~ 95832362 (-) True G208077
TU237655 other upstream 6756 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 532217 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1306345 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1330371 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1413629 99025732 ~ 99026118 (-) True G210765

Expression Profile