RNA id: TU237732



Basic Information


Item Value
RNA id TU237732
length 413
lncRNA type read_through
GC content 0.37
exon number 2
gene id G209885
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97632801 ~ 97669516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcctatagcaggccacgttttgaagtgtctgtcctatagcaggccgtgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctatccaatagcaggccacgttttgaagtgtctgtcctatagcaggccacgtcgtGAAGTGTCTGTTCTATAGCAGgtcgtgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtcctatagcaggccgtgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctatccaatagcaggccacgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtcctatagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237678 lncRNA downstream 15718 97648873 ~ 97653324 (-) True G209863
TU237681 lncRNA downstream 22768 97619795 ~ 97646274 (-) True G209866
TU237645 lncRNA downstream 29433 97621775 ~ 97639609 (-) False LOC118944190
TU237673 lncRNA downstream 51018 97617666 ~ 97618024 (-) True G209858
TU237711 lncRNA downstream 56939 97609516 ~ 97612103 (-) True G209875
TU237741 lncRNA upstream 11035 97680551 ~ 97681121 (-) True G209891
TU237648 lncRNA upstream 29789 97699305 ~ 97723186 (-) False LOC118943868
TU237660 lncRNA upstream 40288 97709804 ~ 97746811 (-) True G209845
TU237744 lncRNA upstream 44675 97714191 ~ 97750984 (-) True G209893
TU237651 lncRNA upstream 46432 97715948 ~ 97723186 (-) False LOC118943868
XM_036960208.1 mRNA downstream 8578 97655151 ~ 97660464 (-) True LOC118943862
XR_005039512.1 mRNA downstream 20994 97647861 ~ 97648048 (-) True LOC118944196
LOC118944213 mRNA downstream 43145 97625781 ~ 97625897 (-) True LOC118944213
LOC118944190 mRNA downstream 46858 97622006 ~ 97622184 (-) False LOC118944190
XM_036934797.1 mRNA downstream 172544 97494344 ~ 97496498 (-) True LOC118937309
LOC118944194 mRNA upstream 13422 97682938 ~ 97683118 (-) True LOC118944194
XR_005039177.1 mRNA upstream 21009 97690525 ~ 97691443 (-) False LOC118943869
LOC118944207 mRNA upstream 48224 97717740 ~ 97717837 (-) True LOC118944207
LOC118944209 mRNA upstream 50158 97719674 ~ 97719773 (-) True LOC118944209
XR_005039176.1 mRNA upstream 52476 97721992 ~ 97723183 (-) False LOC118943868
TU237655 other downstream 49830 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 166648 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 251854 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1246818 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1534570 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 474804 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1248932 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1272958 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1356216 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1453717 99123233 ~ 99123658 (-) True G211127

Expression Profile