RNA id: TU237419



Basic Information


Item Value
RNA id TU237419
length 616
lncRNA type read_through
GC content 0.53
exon number 2
gene id G209658
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97648941 ~ 97653118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTCCCGATGCCGATTCAGGAGAGCAGGATGGGCCACGTTGCGCCAAACCGTTGTGGGCTCACCTATAGCGAGCCCGCGCACTGGACACACTGGTTCCCGATCCtgcacaagagagagaagagagcggtgTTTTGTTAAAACCGTGACTGTTTCTTTTTCCAGTTTAAAATGTCTTAAAAACTTCTGGAGCTGGACGTAGTGCGGGGGTAGCAGGAAAGAGACTGGGGCTCGCAGGTCGACTGGGATCAGCCTCAGAGTCCTGAGGTAAGATCCCAGCCAGAACCGTGTGAGGGCCTGGGTCTTGTTGTTGACCGGGGAGGTGGCAAGAGTCAGATGTAACGCTGTGTAGCGGCTGCCCAGGAACAAGTAGAGGTCAGGCAAGCCTTTCCCCCCCTTGGACCTGGGCCTCTTGACCAcctccctcctcagcctctcccacTTGCATCCCCACAGGAAGTAAAACAGCGTCCGCTCCAGGTCTAAAATGCTCCTTCGAGGGGGGATAAAAACAGAACTGATTAAtaaaagcacaggtaaaatcacaGCTTTAATGATTAAAACCTTGCCCTCAAAAGTCAGCTGTCGTAGTCCCCAAAAACCCAGTCTCTGTCTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237399 lncRNA upstream 2825 97619792 ~ 97646116 (+) False G209648
TU237413 lncRNA upstream 6630 97642050 ~ 97642311 (+) True G209653
TU237376 lncRNA upstream 7566 97640777 ~ 97641375 (+) True G209627
TU237324 lncRNA upstream 29852 97618858 ~ 97619089 (+) True G209591
TU237308 lncRNA upstream 42408 97605362 ~ 97606533 (+) False LOC110533938
TU237422 lncRNA downstream 2049 97655167 ~ 97688536 (+) False G209660
TU237423 lncRNA downstream 3584 97656702 ~ 97688536 (+) True G209660
TU237408 lncRNA downstream 19890 97673008 ~ 97708658 (+) True G209651
TU237428 lncRNA downstream 46695 97699813 ~ 97700168 (+) True G209665
TU237429 lncRNA downstream 49702 97702820 ~ 97706607 (+) True G209666
LOC118944214 mRNA upstream 2428 97646415 ~ 97646513 (+) True LOC118944214
XM_036960305.1 mRNA upstream 8346 97633653 ~ 97640595 (+) False LOC110512361
XM_036960309.1 mRNA upstream 8346 97633653 ~ 97640595 (+) False LOC110512361
XM_036960310.1 mRNA upstream 8917 97633652 ~ 97640024 (+) False LOC110512361
XM_036960315.1 mRNA upstream 8919 97633652 ~ 97640022 (+) False LOC110512361
LOC118944206 mRNA downstream 6450 97659568 ~ 97659781 (+) True LOC118944206
LOC118944223 mRNA downstream 28372 97681490 ~ 97681598 (+) True LOC118944223
LOC118944201 mRNA downstream 37670 97690788 ~ 97691001 (+) True LOC118944201
XM_036960262.1 mRNA downstream 42821 97695939 ~ 97711108 (+) False LOC110500822
LOC118944224 mRNA downstream 63167 97716285 ~ 97716393 (+) True LOC118944224
TU237326 other upstream 29852 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 162169 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1035482 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1420478 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2942693 94705946 ~ 94706248 (+) True G206926
TU237386 other downstream 44993 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 86943 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 304126 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1044050 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1244406 98897524 ~ 98899538 (+) True LOC110510476

Expression Profile