RNA id: TU237741



Basic Information


Item Value
RNA id TU237741
length 391
lncRNA type intronic
GC content 0.47
exon number 2
gene id G209891
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97680551 ~ 97681121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGGCGCTGCAGCACTGTCAGGCCGGGACCTTAGATGTTGTGGGTGATACCTTGTCTGGGTTTGAGGCTCTATTTTGTCCATACCACCTCAGGGCTTCCGTAGCTATCAAGGCCACTGTCTGATGGGTGGTCTCCATGCGTTTCCCTACCAACAAGTTGTCAGAGGACCGCAGTGCGTCCTTCAGACACGTGAGGGTGAGCCAGAGCTTGGTGGAATCGGCCTTCGGTCCACCCGTTACAGCAGGAGCTGAGgcgtggtgtcctgagctgaggcgtggtgtcctgagctgaggcgtggtgtcctgagctgaggcgtGGTGTCCTCCCCTGCTGGCAGACACGAGGAGATCAGGGGGCTTCTTTCCACAGGTCTCTGGTTTATTTCATTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237665 lncRNA downstream 3983 97639887 ~ 97676568 (-) True G209850
TU237646 lncRNA downstream 5551 97621775 ~ 97675000 (-) True LOC118944190
TU237734 lncRNA downstream 7301 97637651 ~ 97673250 (-) True G209886
TU237733 lncRNA downstream 11035 97632801 ~ 97669516 (-) False G209885
TU237732 lncRNA downstream 11035 97669042 ~ 97669516 (-) True G209885
TU237648 lncRNA upstream 18184 97699305 ~ 97723186 (-) False LOC118943868
TU237660 lncRNA upstream 28683 97709804 ~ 97746811 (-) True G209845
TU237744 lncRNA upstream 33070 97714191 ~ 97750984 (-) True G209893
TU237651 lncRNA upstream 34827 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA upstream 41299 97722420 ~ 97723186 (-) True LOC118943868
XM_036960208.1 mRNA downstream 20087 97655151 ~ 97660464 (-) True LOC118943862
XR_005039512.1 mRNA downstream 32503 97647861 ~ 97648048 (-) True LOC118944196
LOC118944213 mRNA downstream 54654 97625781 ~ 97625897 (-) True LOC118944213
LOC118944190 mRNA downstream 58367 97622006 ~ 97622184 (-) False LOC118944190
XM_036934797.1 mRNA downstream 184053 97494344 ~ 97496498 (-) True LOC118937309
LOC118944194 mRNA upstream 1817 97682938 ~ 97683118 (-) True LOC118944194
XR_005039177.1 mRNA upstream 9404 97690525 ~ 97691443 (-) False LOC118943869
LOC118944207 mRNA upstream 36619 97717740 ~ 97717837 (-) True LOC118944207
LOC118944209 mRNA upstream 38553 97719674 ~ 97719773 (-) True LOC118944209
XR_005039176.1 mRNA upstream 40871 97721992 ~ 97723183 (-) False LOC118943868
TU237655 other downstream 61339 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 178157 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 263363 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1258327 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1546079 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 463199 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1237327 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1261353 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1344611 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1442112 99123233 ~ 99123658 (-) True G211127

Expression Profile