RNA id: TU237660


Basic Information

Item Value
RNA id TU237660
length 1886
lncRNA type read_through
GC content 0.39
exon number 2
gene id G209845
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97709804 ~ 97746811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTTATTAAATTAGGTGGATAAAATAAGACAACTTTAATCTTTAATATTGTTTATATTACCAATCCTGAAAATGTGCTGTGAAAAAGAAAAACAAGTGATAATAACCCAGTACAACCTTCTTTCCTAAATACATTTGGTCTGTTTCTCACCTCACTTGATACAAGCCGTGCAAAGTTATGCCAAGGAGACCTAGACTGATTGTTGCTTCAACTCAGTGGAAGCGATTATACTGGGTTTCTCAGTGTAGCAGTGCtgctctaggatcagtttagccttttctgatcataatgaataagaaggGGGGGAGcatctgattctagatcagcgtATCTACTCAGATGTTTTGTGAACATAGGCCCAGGATGAAATGGTCAGCGCCGTGTTTTCTACTTGACCCTACGACTATTTATTGAAATGCTACATAACAGATTATTTTCAGCGCCATCATTCCTCCATTAAAATACACGAACAGTTAAGACTATGGTTACATCATATTCATTTCAGCAGTATATGGGCCTCTGTTCACACATTGACTTGTGTGGCTTCAATACTTCCTAGCCTTAAATTACTTTATCGtaacattttgtattattctccTAGAAAATGTAAATAATGTAGGGGGAAGAATGTTCAGGGCGATATTACCCTCCTTACAACTAGAAGTAATCAATCTTTAAACATTCTAGAAACACGGAATTTAGGAattcaccccccaaaaaaatatttgtaGACTATGTGACCATGCAAACCGAGTCCTGAATTTATCTAACATGTTCATCTCAATGTTGCTTTTCTCAACTGGTCCTAAACTCCTTGACTTATTTGGACATTTTCTCCTGAAAAATACTATGATGTCAAGGATCAATATATATGTGTAATATGTGAAGAGCACCGAACTGACATTTGGAGAACTAAATTCTTTACATAACAATGTAGTATTATATTTCAGAATGCCAATAGCCATCCTTTgagtaaaacaaatatttaatttatACTTGAGAAAAATAGTAATAATCTGATTTGCACGGaacacaaaatgtattttccttcGTCAAACAGTAACAATTAAATGTTGTTTGACAGATCATTTCTTTTAAAAGATCAAATTAAATTCATTCTAGGAttggggaaaaaaaacaagtttGATGCTGGGTTTTCGCATCTCATTATGGGAGGTGAAACATTTTGGTATCCAGAACACAGTCTTATTGGTCAGTCAGTTTCGAGGAATCGTTGAAGGAATTTCTAACGAGGAGAAACAACCCTGCTGAAATCAGACGTTCCTCGTCAAACCATTCAACACTTCTTTTCAGAATCGAGTTTGTGTGCGGCTGGCGGCGGGCGACATAAGGGTGGTTATCATTGGATGGCTCTGGGCAGTAGAATAGGTCATAGGTCATGCCCTGAGGGGGCTTGGTGGAGCAGAGCGGAGGGGGAATGGGGACAGACATTGGAACCCTACTAAAtgccaccctatcccctatataaagggttctacatagggaacagggtgtcgtTTGAGACAGAAATCGGGTTGGTGTCACGTCACATGAAGTCCTCGTAGTCTTGTGCGTAACCTCCATCGAACTCTCCGTAGTCCGATAGGTCATCCTTCATCTTGGACTTCATCCCTCCGGCAGCAACCACacctttctttttcttcttccctTTATTCAGCTGCTGTTGGAAATAAAGACGGATTCGTTTTGTCTTATGACAGTAATTCATTTTATCATCATGTCCATTAGGGCACGcctcagtctgttttcttccgtttgatgcctaatgaacatgacccggACTGAATACCGGTCTAAGTAGACCATGGATACTGGTGATAAATGTCTCTGTATGTAACCATTTTAAAAGCTTGCTTTTGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237668 lncRNA downstream 18090 97636136 ~ 97691714 (-) True LOC118943869
TU237679 lncRNA downstream 19383 97626323 ~ 97690421 (-) True LOC118943865
TU237675 lncRNA downstream 20699 97652692 ~ 97689105 (-) True G209860
TU237642 lncRNA downstream 26048 97647549 ~ 97683756 (-) False G209834
TU237643 lncRNA downstream 26048 97655156 ~ 97683756 (-) True G209834
TU237657 lncRNA upstream 13078 97759889 ~ 97761086 (-) True LOC118943870
TU237666 lncRNA upstream 17478 97764289 ~ 97769193 (-) True G209851
TU237652 lncRNA upstream 32285 97779096 ~ 97780558 (-) True G209838
TU237752 lncRNA upstream 35246 97782057 ~ 97782475 (-) True G209901
TU237753 lncRNA upstream 35890 97782701 ~ 97782951 (-) True G209902
XR_005039177.1 mRNA downstream 18361 97690525 ~ 97691443 (-) False LOC118943869
XM_036960269.1 mRNA downstream 19972 97652206 ~ 97689832 (-) False LOC118943865
LOC118944194 mRNA downstream 26686 97682938 ~ 97683118 (-) True LOC118944194
XM_036960208.1 mRNA downstream 49340 97655151 ~ 97660464 (-) True LOC118943862
XR_005039512.1 mRNA downstream 61756 97647861 ~ 97648048 (-) True LOC118944196
LOC118944208 mRNA upstream 8819 97755630 ~ 97755727 (-) True LOC118944208
LOC118944211 mRNA upstream 10753 97757564 ~ 97757663 (-) True LOC118944211
XR_005039179.1 mRNA upstream 13071 97759882 ~ 97760800 (-) False LOC118943870
XM_036934496.1 mRNA upstream 381137 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 566212 98313023 ~ 98352485 (-) True LOC110500713
TU237655 other downstream 90592 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 207410 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 292616 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1287580 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1575332 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 397509 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1171637 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1195663 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1278921 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1376422 99123233 ~ 99123658 (-) True G211127

Expression Profile