RNA id: TU237659


Basic Information

Item Value
RNA id TU237659
length 5755
lncRNA type read_through
GC content 0.42
exon number 4
gene id G209844
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97726939 ~ 97771450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctataccgtaataccctgtatatagcctccacattgactgtaccgtaataccctgtatataacctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactctataccgtaataccctgtatataacctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctataccgtaataccctgtatatagcctcctcattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatataacctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatataacctccacattgactctgtaccgtaacaccctgtatatagtctccacattggctctgtaccgtaataccttgtatattgtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattggctctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatataacctccacattggctctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatataacctccacattggctctgtaccgtaataccctgtatatagccctgctgtTGTCATTTACTGCTgcgctttaattatttgttattgttaTCTCATACTCTTTTTGTAGGtactttcttaaaactgcattgttggtaaaggaCTTGGtagaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactactcctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacactatattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatagactattttttcccccttttgtttctactgtgttattgacttgtttattgtttactccatgtgtaactctgtgttgtctgttcacactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtaaaataaaataaaaaacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacttcacctgatgtattcagcatttcactgtgaggtctaccacacctgttgtattcagcatttcactgtaaggtctacttcacctgatgtattcagcatttcactgtaaggtctacttcacctgatgtattcagcatttcactgtgaggtctaccacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttaactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttaactgtcaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttaactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcattttactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtgaactgTAACATTTGATTTAGAAGGATACAGGGTGTGTACATTATTAGGCTTTTGCGTCAGGtcaaacctaaaaaaaaaaatacctggTCCAACTGAGGTCCTGTCCTTCTTACCTGGAATCTCTGTTTCTTCTCTGTCATCTCAGTCACTCTGCTGATTAAAGACTGTTCCGCTCCCTGCATCTTCTTCATCTCCTGTTTCAGGTTCCCCTGCAAGACAAAAACACAGTGCCGTCATCCTGCCGTCAATAGAAAACATGCTTTAGCTCTCTGGAACACGTATTTATACTATAACGCGTGTGATATGTTTATTCACCACTAACGATCCTTAGACAACATTAATACTACGGCTCATACAGCTGGGATGTGATCAGgtatTTTTGTggtgtgttggtatgtgtgttTGGTAAACACTCCTCTGTTTCTCACCCTCAGCTCCCTCTCGGCCTCTCTGATGCTGACGCAAGCGTGGTCCCGGTGCGACCCGATCACGGTACACacggtacagacacacacactacactgacggCAGTAGATTCGGTTCATCTCCTGGTGTTCCGGGCACCTGATGACCATgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237648 lncRNA downstream 3753 97699305 ~ 97723186 (-) False LOC118943868
TU237651 lncRNA downstream 3753 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA downstream 3753 97722420 ~ 97723186 (-) True LOC118943868
TU237668 lncRNA downstream 35225 97636136 ~ 97691714 (-) True LOC118943869
TU237679 lncRNA downstream 36518 97626323 ~ 97690421 (-) True LOC118943865
TU237652 lncRNA upstream 7646 97779096 ~ 97780558 (-) True G209838
TU237752 lncRNA upstream 10607 97782057 ~ 97782475 (-) True G209901
TU237753 lncRNA upstream 11251 97782701 ~ 97782951 (-) True G209902
TU237760 lncRNA upstream 19723 97791173 ~ 97791393 (-) True G209907
TU237767 lncRNA upstream 29547 97800997 ~ 97801343 (-) True G209914
XR_005039176.1 mRNA downstream 3756 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 7166 97719674 ~ 97719773 (-) True LOC118944209
LOC118944207 mRNA downstream 9102 97717740 ~ 97717837 (-) True LOC118944207
XR_005039177.1 mRNA downstream 35496 97690525 ~ 97691443 (-) False LOC118943869
LOC118944194 mRNA downstream 43821 97682938 ~ 97683118 (-) True LOC118944194
XM_036934496.1 mRNA upstream 356498 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 541573 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 652565 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 652890 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 703284 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 107727 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 224545 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 309751 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1304715 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1592467 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 372870 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1146998 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1171024 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1254282 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1351783 99123233 ~ 99123658 (-) True G211127

Expression Profile