RNA id: TU237666


Basic Information

Item Value
RNA id TU237666
length 1023
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G209851
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97764289 ~ 97769193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCTGACGCAAGCGTGGTCCCGGTGCGACCCGATCACGGTACACacggtacagacacacacactacactgacggCAGTAGATTCGGTTCATCTCCTGGTGTTCCGGGCACCTGATGACCATgacctgagccctaggaccatgccccaggactacctgacatgataactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttagccatgttctgttataatctccacccggcacagccaaaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttaaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagcagatgtacgaagggctatatatataaatttgatttgatttgacctgatcttgcctcctcccgACCACCTTCCATGTTTTAAGACACATTATTTTAGAGCTGTGACACACTGGTCTGGACAGGAGGCCTTTTGTAAAAAAGGCATCATTTGCTCAGAATTGGAGCCGACACATTGGTTGGTTCTCTCAACAACAACGACAGGACTTTGTGTTAGCCAGACTAACTCATAGGTGAGTCCCATACTGGCATGTTAAGTCAGGGAGCATTAATAAAGTGTTATAATGGCAGAGGGTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237657 lncRNA downstream 3203 97759889 ~ 97761086 (-) True LOC118943870
TU237744 lncRNA downstream 13305 97714191 ~ 97750984 (-) True G209893
TU237660 lncRNA downstream 17478 97709804 ~ 97746811 (-) True G209845
TU237648 lncRNA downstream 41103 97699305 ~ 97723186 (-) False LOC118943868
TU237651 lncRNA downstream 41103 97715948 ~ 97723186 (-) False LOC118943868
TU237652 lncRNA upstream 9903 97779096 ~ 97780558 (-) True G209838
TU237752 lncRNA upstream 12864 97782057 ~ 97782475 (-) True G209901
TU237753 lncRNA upstream 13508 97782701 ~ 97782951 (-) True G209902
TU237760 lncRNA upstream 21980 97791173 ~ 97791393 (-) True G209907
TU237767 lncRNA upstream 31804 97800997 ~ 97801343 (-) True G209914
XR_005039179.1 mRNA downstream 3489 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 6626 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 8562 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 41106 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 44516 97719674 ~ 97719773 (-) True LOC118944209
XM_036934496.1 mRNA upstream 358755 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 543830 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 654822 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 655147 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 705541 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 145077 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 261895 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 347101 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1342065 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1629817 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 375127 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1149255 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1173281 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1256539 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1354040 99123233 ~ 99123658 (-) True G211127

Expression Profile