RNA id: TU237753



Basic Information


Item Value
RNA id TU237753
length 251
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G209902
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97782701 ~ 97782951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cggatgctCTCTGcatgtggttcccacagtgaagcatggaggaggaggtgtgatggtgtgggggtgctttgctggtgacactgtcagtgatttatttagaattcaaggcacacttaaccagcatggctaacacagcattctgcagcaatactccCATCCCATCCATCTGGTTTAcgcatagtgggactatcatttgtttttgaacaggacaatgacccaacacaacctccaggctgtgtaagggctatttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237752 lncRNA downstream 226 97782057 ~ 97782475 (-) True G209901
TU237652 lncRNA downstream 2143 97779096 ~ 97780558 (-) True G209838
TU237659 lncRNA downstream 11251 97726939 ~ 97771450 (-) True G209844
TU237666 lncRNA downstream 13508 97764289 ~ 97769193 (-) True G209851
TU237657 lncRNA downstream 21615 97759889 ~ 97761086 (-) True LOC118943870
TU237760 lncRNA upstream 8222 97791173 ~ 97791393 (-) True G209907
TU237767 lncRNA upstream 18046 97800997 ~ 97801343 (-) True G209914
TU237768 lncRNA upstream 18650 97801601 ~ 97801957 (-) True G209915
TU237774 lncRNA upstream 30608 97813559 ~ 97855601 (-) True G209919
TU237776 lncRNA upstream 34921 97817872 ~ 97836595 (-) True G209920
XR_005039179.1 mRNA downstream 21901 97759882 ~ 97760800 (-) False LOC118943870
LOC118944211 mRNA downstream 25038 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 26974 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 59518 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 62928 97719674 ~ 97719773 (-) True LOC118944209
XM_036934496.1 mRNA upstream 344997 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 530072 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 641064 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 641389 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 691783 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 163489 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 280307 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 365513 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1360477 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1648229 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 361369 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1135497 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1159523 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1242781 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1340282 99123233 ~ 99123658 (-) True G211127

Expression Profile