RNA id: TU237463


Basic Information

Item Value
RNA id TU237463
length 210
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G209694
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97802875 ~ 97803084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagatccagagagagggacaacaaacagatccagagagagggacaacaaacagatccagagagagggacaacaaacagatccagagagagggacaacaaaaagatccagagagggacaacaaacagatccagagagcgagggacaacaaacagatccagagagggacaacaaacagatccagagagagagagagacaacaaacagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237462 lncRNA upstream 263 97802211 ~ 97802612 (+) True G209693
TU237461 lncRNA upstream 986 97801658 ~ 97801889 (+) True G209692
TU237456 lncRNA upstream 6611 97795220 ~ 97796264 (+) True G209687
TU237449 lncRNA upstream 15279 97787391 ~ 97787596 (+) True G209680
TU237442 lncRNA upstream 41804 97759785 ~ 97761071 (+) True LOC118944204
TU237471 lncRNA downstream 16167 97819251 ~ 97850770 (+) True G209701
TU237474 lncRNA downstream 23351 97826435 ~ 97831133 (+) False G209703
TU237475 lncRNA downstream 23351 97826435 ~ 97847740 (+) True G209703
TU237481 lncRNA downstream 30190 97833274 ~ 97912379 (+) True G209708
TU237483 lncRNA downstream 33263 97836347 ~ 97857263 (+) True G209710
XM_036960337.1 mRNA upstream 23350 97766568 ~ 97779525 (+) True si:dkey-29p10.4
LOC118944204 mRNA upstream 42517 97760145 ~ 97760358 (+) False LOC118944204
LOC118944218 mRNA upstream 48603 97754174 ~ 97754272 (+) True LOC118944218
XM_036960233.1 mRNA upstream 56059 97732206 ~ 97746816 (+) False LOC110512528
XM_036960342.1 mRNA downstream 101784 97904868 ~ 98015151 (+) False LOC110500615
XM_036960346.1 mRNA downstream 101784 97904868 ~ 98015152 (+) True LOC110500615
XR_005039180.1 mRNA downstream 213557 98016641 ~ 98017881 (+) False LOC118943873
XM_036960349.1 mRNA downstream 223251 98026335 ~ 98086147 (+) True LOC118943872
XM_036934485.1 mRNA downstream 288205 98091289 ~ 98092512 (+) True LOC118936883
TU237387 other upstream 30110 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 103099 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 183786 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 316103 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1189416 96612429 ~ 96613459 (+) True G208836
TU237549 other downstream 154160 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 894084 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1094440 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 1099704 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1434294 99237378 ~ 99238258 (+) True G210823

Expression Profile