RNA id: TU237471


Basic Information

Item Value
RNA id TU237471
length 277
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G209701
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97819251 ~ 97850770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaaacagatccagggagggagggacaacaaacagatccagagagagagagagacaacaaacagatccagggagggagggacaacaaacagatccagagagagagggacaacaaacagatccagccagggagagggacaacaaacagatccagagagagagggacaacaaacagatccagatagagagggacaacaaacagatccagagagagagggacaacaaacagatctagagagagagggacaacaaacagatccagagagaaagggagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237463 lncRNA upstream 16167 97802875 ~ 97803084 (+) True G209694
TU237462 lncRNA upstream 16639 97802211 ~ 97802612 (+) True G209693
TU237461 lncRNA upstream 17362 97801658 ~ 97801889 (+) True G209692
TU237456 lncRNA upstream 22987 97795220 ~ 97796264 (+) True G209687
TU237449 lncRNA upstream 31655 97787391 ~ 97787596 (+) True G209680
TU237486 lncRNA downstream 5950 97856720 ~ 97858647 (+) True G209711
TU237550 lncRNA downstream 106474 97957244 ~ 97958896 (+) True G209759
TU237564 lncRNA downstream 141719 97992489 ~ 97994625 (+) False G209771
TU237565 lncRNA downstream 142057 97992827 ~ 97993756 (+) True G209771
TU237568 lncRNA downstream 158103 98008873 ~ 98009462 (+) True G209774
XM_036960337.1 mRNA upstream 39726 97766568 ~ 97779525 (+) True si:dkey-29p10.4
LOC118944204 mRNA upstream 58893 97760145 ~ 97760358 (+) False LOC118944204
LOC118944218 mRNA upstream 64979 97754174 ~ 97754272 (+) True LOC118944218
XM_036960233.1 mRNA upstream 72435 97732206 ~ 97746816 (+) False LOC110512528
XM_036960342.1 mRNA downstream 54098 97904868 ~ 98015151 (+) False LOC110500615
XM_036960346.1 mRNA downstream 54098 97904868 ~ 98015152 (+) True LOC110500615
XR_005039180.1 mRNA downstream 165871 98016641 ~ 98017881 (+) False LOC118943873
XM_036960349.1 mRNA downstream 175565 98026335 ~ 98086147 (+) True LOC118943872
XM_036934485.1 mRNA downstream 240519 98091289 ~ 98092512 (+) True LOC118936883
TU237387 other upstream 46486 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 119475 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 200162 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 332479 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1205792 96612429 ~ 96613459 (+) True G208836
TU237549 other downstream 106474 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 846398 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1046754 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 1052018 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1386608 99237378 ~ 99238258 (+) True G210823

Expression Profile