RNA id: TU237481


Basic Information

Item Value
RNA id TU237481
length 282
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G209708
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97833274 ~ 97912379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacaacaaacagatcccgatccagagagagagggacaacaaacagatccagagagggaaggacaacaaacagatccagagagagacaacaaacaggtccagagagggagggacaacaaacagatccagagagcgacaacaaacagatccagagagagagagataacaaacagatccagagagagagacaacaaacagatccagagagagagacaacaaacagatccatagagagagggacaacaaacagatccagagagagagagggaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237474 lncRNA upstream 2141 97826435 ~ 97831133 (+) False G209703
TU237463 lncRNA upstream 30190 97802875 ~ 97803084 (+) True G209694
TU237462 lncRNA upstream 30662 97802211 ~ 97802612 (+) True G209693
TU237461 lncRNA upstream 31385 97801658 ~ 97801889 (+) True G209692
TU237456 lncRNA upstream 37010 97795220 ~ 97796264 (+) True G209687
TU237550 lncRNA downstream 44865 97957244 ~ 97958896 (+) True G209759
TU237564 lncRNA downstream 80110 97992489 ~ 97994625 (+) False G209771
TU237565 lncRNA downstream 80448 97992827 ~ 97993756 (+) True G209771
TU237568 lncRNA downstream 96494 98008873 ~ 98009462 (+) True G209774
TU237505 lncRNA downstream 103045 98015424 ~ 98017870 (+) False LOC118943873
XM_036960337.1 mRNA upstream 53749 97766568 ~ 97779525 (+) True si:dkey-29p10.4
LOC118944204 mRNA upstream 72916 97760145 ~ 97760358 (+) False LOC118944204
LOC118944218 mRNA upstream 79002 97754174 ~ 97754272 (+) True LOC118944218
XM_036960233.1 mRNA upstream 86458 97732206 ~ 97746816 (+) False LOC110512528
XR_005039180.1 mRNA downstream 104262 98016641 ~ 98017881 (+) False LOC118943873
XM_036960349.1 mRNA downstream 113956 98026335 ~ 98086147 (+) True LOC118943872
XM_036934485.1 mRNA downstream 178910 98091289 ~ 98092512 (+) True LOC118936883
XM_036960371.1 mRNA downstream 249283 98161662 ~ 98269443 (+) False LOC118943874
XM_036960365.1 mRNA downstream 249284 98161663 ~ 98269443 (+) True LOC118943874
TU237387 other upstream 60509 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 133498 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 214185 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 346502 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1219815 96612429 ~ 96613459 (+) True G208836
TU237549 other downstream 44865 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 784789 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 985145 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 990409 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1324999 99237378 ~ 99238258 (+) True G210823

Expression Profile