RNA id: TU237483


Basic Information

Item Value
RNA id TU237483
length 326
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G209710
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97836347 ~ 97857263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagagagagagagacaacaaacagatccagagagcgagagacaacaaacagatccagagagagagagacaacaaacagatccagagagagagggacaacaaacagatccagagagagagagacaacaaacagatccagagagagagggacaacaaacagatccagagagagagggacaacaaacagatccagagagggagggacaacaaacagatccagagagagagggacaacaaacagatccagagagagaggaacaacaaacagatccagagagagagagagacaacaaacagatccagatagagggacaacaaacagatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237474 lncRNA upstream 5214 97826435 ~ 97831133 (+) False G209703
TU237463 lncRNA upstream 33263 97802875 ~ 97803084 (+) True G209694
TU237462 lncRNA upstream 33735 97802211 ~ 97802612 (+) True G209693
TU237461 lncRNA upstream 34458 97801658 ~ 97801889 (+) True G209692
TU237456 lncRNA upstream 40083 97795220 ~ 97796264 (+) True G209687
TU237550 lncRNA downstream 99981 97957244 ~ 97958896 (+) True G209759
TU237564 lncRNA downstream 135226 97992489 ~ 97994625 (+) False G209771
TU237565 lncRNA downstream 135564 97992827 ~ 97993756 (+) True G209771
TU237568 lncRNA downstream 151610 98008873 ~ 98009462 (+) True G209774
TU237505 lncRNA downstream 158161 98015424 ~ 98017870 (+) False LOC118943873
XM_036960337.1 mRNA upstream 56822 97766568 ~ 97779525 (+) True si:dkey-29p10.4
LOC118944204 mRNA upstream 75989 97760145 ~ 97760358 (+) False LOC118944204
LOC118944218 mRNA upstream 82075 97754174 ~ 97754272 (+) True LOC118944218
XM_036960233.1 mRNA upstream 89531 97732206 ~ 97746816 (+) False LOC110512528
XM_036960342.1 mRNA downstream 47605 97904868 ~ 98015151 (+) False LOC110500615
XM_036960346.1 mRNA downstream 47605 97904868 ~ 98015152 (+) True LOC110500615
XR_005039180.1 mRNA downstream 159378 98016641 ~ 98017881 (+) False LOC118943873
XM_036960349.1 mRNA downstream 169072 98026335 ~ 98086147 (+) True LOC118943872
XM_036934485.1 mRNA downstream 234026 98091289 ~ 98092512 (+) True LOC118936883
TU237387 other upstream 63582 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 136571 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 217258 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 349575 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1222888 96612429 ~ 96613459 (+) True G208836
TU237549 other downstream 99981 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 839905 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1040261 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 1045525 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1380115 99237378 ~ 99238258 (+) True G210823

Expression Profile