RNA id: TU238010


Basic Information

Item Value
RNA id TU238010
length 315
lncRNA type intronic
GC content 0.44
exon number 2
gene id G210095
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98201845 ~ 98202236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTCTCAATCCCATGATCCATAGGCTAGTTAGAGTGGTCTCAATCCCATGATCCATAACCTATAGGCTAGCTAGAGTGGTCTCAATCCCATGATCCATAACCTATAGGCTAGTTAGAGTGGTCTCAATCCcatgatccatagcctataggctagtTAGAGTGGTCTCAATGCCATGATCCATAACCTATAGGCTAGTTAGAGTGGTCTCAATCCCATGATCTATAACCTATAGGCTAGTTAGAGTGGTCTCAATCCCATGATCCATAACCTATAGGCTAGTTAGAGTGGTCTCAATCCCATGATCCATAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237992 lncRNA upstream 20834 98180490 ~ 98181011 (+) True G210082
TU237964 lncRNA upstream 62312 98139298 ~ 98139533 (+) True G210060
TU237958 lncRNA upstream 68173 98133409 ~ 98133672 (+) True G210054
TU237957 lncRNA upstream 69976 98131588 ~ 98131869 (+) True G210053
TU237384 lncRNA upstream 93749 98106874 ~ 98108096 (+) True G209633
TU238126 lncRNA downstream 95880 98298116 ~ 98298459 (+) True G210190
TU238136 lncRNA downstream 102164 98304400 ~ 98305391 (+) True G210198
TU238191 lncRNA downstream 150506 98352742 ~ 98353076 (+) True G210233
TU238196 lncRNA downstream 155601 98357837 ~ 98358105 (+) True G210238
TU238200 lncRNA downstream 163221 98365457 ~ 98365659 (+) True G210242
XM_036934485.1 mRNA upstream 109333 98091289 ~ 98092512 (+) True LOC118936883
XM_036960349.1 mRNA upstream 115698 98026335 ~ 98086147 (+) True LOC118943872
XR_005039180.1 mRNA upstream 183964 98016641 ~ 98017881 (+) False LOC118943873
XM_036960346.1 mRNA upstream 186693 97904868 ~ 98015152 (+) True LOC110500615
XM_036960342.1 mRNA upstream 186694 97904868 ~ 98015151 (+) False LOC110500615
NM_001160691.1 mRNA downstream 235649 98437885 ~ 98453966 (+) True gp137
XM_036960394.1 mRNA downstream 338176 98540412 ~ 98572764 (+) False LOC110500731
XM_036960400.1 mRNA downstream 338176 98540412 ~ 98572764 (+) False LOC110500731
XM_036960408.1 mRNA downstream 338176 98540412 ~ 98572764 (+) False LOC110500731
XM_036960411.1 mRNA downstream 338176 98540412 ~ 98572764 (+) False LOC110500731
TU237549 other upstream 244009 97957244 ~ 97957836 (+) False G209759
TU237387 other upstream 429080 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 502069 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 582756 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 715073 97486476 ~ 97486772 (+) True G209586
TU238408 other downstream 494932 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 695288 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 700552 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1035142 99237378 ~ 99238258 (+) True G210823
TU239134 other downstream 1517943 99720179 ~ 99721983 (+) True G210983

Expression Profile