RNA id: TU238813



Basic Information


Item Value
RNA id TU238813
length 205
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G210710
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98809799 ~ 98810003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtacggggatacaggttagtcgaggtaatttgtgtATGTCGGTAGTGGATGGCtgcgaataatatagatgaagtctcttggtagatagtgtggtttacagcttatcatgaggtactctacctcaggcgagcaatacctcaagacttctttaatattagacatcgctcaCCAGcttttattgacaaatagacacatacCCCCAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU238810 lncRNA downstream 22768 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 23339 98785611 ~ 98786460 (-) True G210706
TU238754 lncRNA downstream 24236 98784328 ~ 98785563 (-) True G210665
TU238791 lncRNA downstream 42104 98765404 ~ 98767695 (-) True G210693
TU238796 lncRNA downstream 54997 98745067 ~ 98754802 (-) True G210694
TU238745 lncRNA upstream 25668 98835671 ~ 98841916 (-) True G210656
TU238832 lncRNA upstream 99933 98909936 ~ 98910293 (-) True G210728
TU238834 lncRNA upstream 122953 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 122953 98932956 ~ 98933448 (-) True G210730
TU238843 lncRNA upstream 153748 98963751 ~ 98964109 (-) True G210738
XM_021578108.2 mRNA downstream 1459 98803005 ~ 98808340 (-) True LOC110500630
XM_021578120.2 mRNA downstream 1605 98795959 ~ 98808194 (-) True LOC110500636
XM_036960440.1 mRNA downstream 12011 98795849 ~ 98797788 (-) False LOC110500636
XM_036960449.1 mRNA downstream 86697 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA downstream 86697 98692756 ~ 98723102 (-) True LOC110500839
XM_036960454.1 mRNA upstream 9778 98819781 ~ 98832865 (-) False LOC110502520
XM_036960480.1 mRNA upstream 9778 98819781 ~ 98832865 (-) False LOC110502520
XM_036960486.1 mRNA upstream 9778 98819781 ~ 98832865 (-) False LOC110502520
XM_036960495.1 mRNA upstream 9778 98819781 ~ 98832865 (-) False LOC110502520
XM_036960497.1 mRNA upstream 9778 98819781 ~ 98832865 (-) False LOC110502520
TU238041 other downstream 664282 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1190587 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1307405 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1392611 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2387575 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 108445 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 132471 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 215729 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 313230 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 805673 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile