RNA id: TU238516



Basic Information


Item Value
RNA id TU238516
length 695
RNA type TUCP
GC content 0.57
exon number 2
gene id G210484
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98902788 ~ 98926406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGGAAGACGAGAGCGGCCATGATGGATACCGCCATCCTCCTGCTTCGTTTTCCATCGGTGCTGACCTCATGTATGCTGGACAGCCTCGTTTCTGCAGGAAGTGTAGCACGTACGGGCACCTCGCGGATGCCTGCACACAGACAAGGTGCAGAAACTGTGGAATTATTGGACACACAATGAGGGATTGCACCGTGCCAAAGCGCTGCAGTCTGTGTAACTCAGAGGACCACCTGTTCCGTCACTGCCCGAAGGCAGTCCCCTCTTACGCCAGAGCGGTGAGCGGGAAAAGAGCGGAAGGCGGGAAAAGACCAGATGAGGGAGAAGGCATGGAACTACGCGCTATTGAGGAGGTTGTGGATGagatagtgatggagagagaacTGCGAGAGTCAGAGGAGAGCGGGAGTGAGACGCCATCATCATCTcacgaggagagaggagaagcggACAGAAGTTGGAATAAGcaagtggaggaggagaagggagagccCACTGCGCCCGCGGCTACCGAGAGCTGGACaacggtgagagagaggagaaagtgcgCGGTGAAAAGGAAGCAGATGAGCCCTGTTTCCCCACTCATCCGCATGGAGGCGACGGAGAAGTCCGCTTTGGGGGGGAATCGCTTCAGTTGTTTCGAAAGCGGGAAGTCTGAGGAGAAAAGCGAGGGAAACCTGGGCAGCGCAGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU238515 lncRNA upstream 8673 98893442 ~ 98894115 (+) False G210483
TU238514 lncRNA upstream 8673 98893636 ~ 98894115 (+) True G210483
TU238503 lncRNA upstream 16928 98877838 ~ 98885860 (+) False G210480
TU238509 lncRNA upstream 18942 98879245 ~ 98883846 (+) False G210480
TU238275 lncRNA upstream 29062 98872945 ~ 98873726 (+) True G210310
TU238527 lncRNA downstream 53422 98979828 ~ 98980286 (+) True G210492
TU238546 lncRNA downstream 88646 99015052 ~ 99015276 (+) True G210508
TU238273 lncRNA downstream 95651 99022057 ~ 99022698 (+) True G210308
TU238253 lncRNA downstream 98592 99024998 ~ 99025499 (+) True G210288
TU238885 lncRNA downstream 167202 99093608 ~ 99093905 (+) True G210776
XM_036960500.1 mRNA upstream 34427 98864637 ~ 98868361 (+) True LOC110500657
XM_036960505.1 mRNA upstream 34428 98863833 ~ 98868360 (+) False LOC110500657
LOC118944193 mRNA downstream 3951 98930357 ~ 98930537 (+) True LOC118944193
XR_005039213.1 mRNA downstream 23070 98949476 ~ 98950379 (+) True LOC118943887
XR_005039500.1 mRNA downstream 26195 98952601 ~ 98952791 (+) False LOC118944187
XM_036960619.1 mRNA downstream 163268 99089674 ~ 99152115 (+) False atp8b4
XM_036960628.1 mRNA downstream 163268 99089674 ~ 99152115 (+) False atp8b4
TU238278 other upstream 3250 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 202396 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 944952 97957244 ~ 97957836 (+) False G209759
TU237387 other upstream 1130023 97740061 ~ 97772765 (+) True G209636
TU237386 other upstream 1203012 97698111 ~ 97699776 (+) True LOC110500822
TU238947 other downstream 310972 99237378 ~ 99238258 (+) True G210823
TU239134 other downstream 793773 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 878762 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 886759 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 970213 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile