RNA id: TU238832



Basic Information


Item Value
RNA id TU238832
length 265
lncRNA type intronic
GC content 0.39
exon number 2
gene id G210728
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98909936 ~ 98910293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATGAGGTTATTCTAGTCCTATACCTCCATCGTGAgttaggaggaggaagaggaggaggtgtggtgagCTTTAGTGTTAATACTGGAGAAAGGCCTGTCCCAGTCTCCTCTCTATATGTACcactaatgtaaatgtaaatatcaAAACagataccaaacattaagaaacTATAAGGAAGAGAAGAGTAACTGCAATGAAATAAACCAGAGACCTGTGGAAAGAAGCCCCCTGATCTCCTCGTGTCTGCCAGCAGGGGAGGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU238745 lncRNA downstream 68020 98835671 ~ 98841916 (-) True G210656
TU238813 lncRNA downstream 99933 98809799 ~ 98810003 (-) True G210710
TU238810 lncRNA downstream 122905 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 123476 98785611 ~ 98786460 (-) True G210706
TU238754 lncRNA downstream 124373 98784328 ~ 98785563 (-) True G210665
TU238834 lncRNA upstream 22663 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 22663 98932956 ~ 98933448 (-) True G210730
TU238843 lncRNA upstream 53458 98963751 ~ 98964109 (-) True G210738
TU238862 lncRNA upstream 106420 99016713 ~ 99016971 (-) True G210757
TU238865 lncRNA upstream 107854 99018147 ~ 99018442 (-) True G210760
LOC118944227 mRNA downstream 866 98908962 ~ 98909070 (-) True LOC118944227
XM_036960543.1 mRNA downstream 11812 98895268 ~ 98898124 (-) True LOC110510475
XM_036960550.1 mRNA downstream 11815 98895140 ~ 98898121 (-) False LOC110510475
XM_036960558.1 mRNA downstream 11816 98895181 ~ 98898120 (-) False LOC110510475
XR_005039209.1 mRNA downstream 17793 98876074 ~ 98892143 (-) False LOC118943884
XM_036960562.1 mRNA upstream 3722 98914015 ~ 98921036 (-) False LOC118943885
XM_036960568.1 mRNA upstream 7803 98918096 ~ 98921035 (-) False LOC118943885
LOC118944228 mRNA upstream 21585 98931878 ~ 98931986 (-) True LOC118944228
XM_036960525.1 mRNA upstream 26490 98936783 ~ 98944011 (-) False LOC118943882
XM_036960526.1 mRNA upstream 26490 98936783 ~ 98944041 (-) False LOC118943882
TU238041 other downstream 764419 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1290724 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1407542 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1492748 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2487712 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 8155 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 32181 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 115439 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 212940 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 705383 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile