RNA id: TU239327



Basic Information


Item Value
RNA id TU239327
length 210
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G211125
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99120999 ~ 99121208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCTCCTCAGGCATGACAGTATGACACAAAGCCAGCAGTCTGAAGAAGTCCTGCACTGATGGCTCCTCCATCTTGATGGCCTCCAACAGGCTACTGTCATGAAACTTAAACTTCCTGTCACTCAGAGGGTTGAAAGAGAAATCTACACAGGCCGTTCTCTGGAGGGAGATGGACCAGAACACAGTTACTAACTTATAGTTTAACTTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU239323 lncRNA downstream 4615 99116131 ~ 99116384 (-) True G211121
TU239322 lncRNA downstream 4921 99115849 ~ 99116078 (-) True G211120
TU239316 lncRNA downstream 12360 99108414 ~ 99108639 (-) True G211114
TU239310 lncRNA downstream 21686 99099110 ~ 99099313 (-) True G211108
TU239309 lncRNA downstream 24781 99095938 ~ 99096218 (-) True G211107
TU239332 lncRNA upstream 3844 99125052 ~ 99125370 (-) True G211128
TU239336 lncRNA upstream 14511 99135719 ~ 99136006 (-) True G211132
TU239340 lncRNA upstream 22914 99144122 ~ 99144437 (-) True G211136
TU239341 lncRNA upstream 23477 99144685 ~ 99145004 (-) True G211137
TU239346 lncRNA upstream 30599 99151807 ~ 99152091 (-) True G211142
XM_021578338.2 mRNA downstream 107622 98997411 ~ 99013377 (-) True LOC110500795
XM_021578332.2 mRNA downstream 107858 98997411 ~ 99013141 (-) False LOC110500795
XM_036960597.1 mRNA downstream 124825 98974844 ~ 98996174 (-) True ctdspl2a
XM_036960604.1 mRNA downstream 125149 98974844 ~ 98995850 (-) False ctdspl2a
XM_036960590.1 mRNA downstream 125153 98974844 ~ 98995846 (-) False ctdspl2a
XR_005039228.1 mRNA upstream 33051 99154259 ~ 99166351 (-) False galk2
XM_036960690.1 mRNA upstream 33052 99154260 ~ 99165018 (-) False galk2
XM_036960677.1 mRNA upstream 33052 99154260 ~ 99166352 (-) True galk2
XM_036960758.1 mRNA upstream 100642 99221850 ~ 99375962 (-) False tjp1b
XM_036960728.1 mRNA upstream 100642 99221850 ~ 99503454 (-) False tjp1b
TU238870 other downstream 94881 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 174930 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 177202 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 975482 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1501787 97618859 ~ 97619212 (-) True G209841
TU239331 other upstream 2025 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 494468 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 589493 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 735105 99856313 ~ 99857855 (-) True G211402
TU239747 other upstream 838349 99959557 ~ 99963474 (-) True G211447

Expression Profile