RNA id: TU238909


Basic Information

Item Value
RNA id TU238909
length 364
lncRNA type intronic
GC content 0.42
exon number 1
gene id G210794
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99147264 ~ 99147627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagtagaaaggcccctttagtgtcctaagttttcataactgggaccttaattgcctaccatctgtaagctgtcagtgtcttaacgaccgttccacaagtgcatgttcattcattgtttatggttcattgaacaagcatggggaacagtgtttaaaccctttacaatgaagatctgtgaagttatttggatttttacgaattatctttgaaagacagggtcctgaaaaagggttgtctttttttgctgagtttatttacaCCCCTGAGAacatacatgttagaatcacctttgactGCAGTTACACAtgcaagtctttctgggtaagtctctaagagctttgcacacctatattgtacaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238908 lncRNA upstream 7627 99139020 ~ 99139637 (+) True G210793
TU238904 lncRNA upstream 8746 99137878 ~ 99138518 (+) True G210792
TU238902 lncRNA upstream 9612 99136097 ~ 99137652 (+) True G210791
TU238898 lncRNA upstream 21198 99125802 ~ 99126066 (+) True G210787
TU238897 lncRNA upstream 24549 99122509 ~ 99122715 (+) True G210786
TU238910 lncRNA downstream 2004 99149631 ~ 99149925 (+) True G210795
TU238878 lncRNA downstream 3165 99150792 ~ 99151659 (+) True atp8b4
TU238880 lncRNA downstream 5742 99153369 ~ 99153909 (+) True G210772
TU238876 lncRNA downstream 35125 99182752 ~ 99183508 (+) False G210768
TU238875 lncRNA downstream 35360 99182987 ~ 99183728 (+) True G210768
XR_005039500.1 mRNA upstream 194473 98952601 ~ 98952791 (+) False LOC118944187
XR_005039213.1 mRNA upstream 196885 98949476 ~ 98950379 (+) True LOC118943887
XR_005039211.1 mRNA upstream 202316 98898495 ~ 98944948 (+) False LOC110510476
XM_036960644.1 mRNA downstream 18736 99166363 ~ 99180897 (+) False cops2
XM_036960651.1 mRNA downstream 18736 99166363 ~ 99180897 (+) False cops2
XM_036960665.1 mRNA downstream 18736 99166363 ~ 99180897 (+) False cops2
XM_036960656.1 mRNA downstream 18747 99166374 ~ 99180895 (+) False cops2
XM_036960669.1 mRNA downstream 18747 99166374 ~ 99180895 (+) True cops2
TU238516 other upstream 220858 98902788 ~ 98926406 (+) True G210484
TU238278 other upstream 247726 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 446872 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 1189428 97957244 ~ 97957836 (+) False G209759
TU237387 other upstream 1374499 97740061 ~ 97772765 (+) True G209636
TU238947 other downstream 89751 99237378 ~ 99238258 (+) True G210823
TU239134 other downstream 572552 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 657541 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 665538 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 748992 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile