RNA id: TU238947


Basic Information

Item Value
RNA id TU238947
length 843
RNA type TUCP
GC content 0.64
exon number 2
gene id G210823
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99237378 ~ 99238258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTCGTCAGCCTCCTTGGCTCGGTCAACAGACAACGACCTTTTATTCTCAAACATCTTGACCCTGTTGAGCACCGATTGGGGCTTCATGGCCGGGTCgtccctttcctcctcccccgGGGGCTTGGACCCCGCGTTTACTCCCATCTCTCCTGGGGAGGCCAGGGGTTCAGGTTTGGGAGGGGGCAAGGGCGGGTCAGAGGTCATTAGAGGTTCACGGTTGTAGCCACCGCCCCGGCTGGGAGTCCCCGAAATACTGCTTGGGGGGGTCTGGGGAGCGGGGCGAGCTTACGGGGTAGCAGTGAGGGGACTCGGACTCGTAAGGGGAGCGAGCGTCGTAAGGGCCAGCCGAGGGCGGGGGAGGCGGTTCATCGTACCGCATAGGCCCCGGAGTTTTACCATGACGAGGCCTGCCGTCGTAGCCCTGCATCCCCGCCGGTGCCTCATCGTAGCAGGGCTGGGGGGGGCTGTAGTCCCTGACTGGGCCGTCCTCGTAGGGGGTGGTCCCCCTGGGAGTGTAGCCCTGCTGGTGGCCTGGGCCAGGCTGGTACGCCGGGGGCTGGGGGGAAGAGGTCTGCTGGTCGTAGGGGGGCCACTGGCCGTCGGCAAAGTGTTGAGGCACACGGTTGTTGTAGTGCAGGTGAGAAGTGTGAGGGTCAAAGTTCCCCTGGGGAGGCTGCTTTGGTTCGGCGTAGCCCCCCCCGTCGCTACAGTAGCCGTAAGGCGGGTGGTCGTACTGGCGGTGTGGCTGTTGGTCCTGGTAGGGCTGGTGGGTGTAGCTCAGAGACGACTTCATGCCGCCGTGGTTCACTCTCACTGGTTCCTCCAGACTGTACAGATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238937 lncRNA upstream 13391 99221886 ~ 99223987 (+) True G210814
TU238916 lncRNA upstream 51673 99185356 ~ 99185705 (+) True G210801
TU238915 lncRNA upstream 52248 99184901 ~ 99185130 (+) True G210800
TU238875 lncRNA upstream 53650 99182987 ~ 99183728 (+) True G210768
TU238876 lncRNA upstream 53870 99182752 ~ 99183508 (+) False G210768
TU238952 lncRNA downstream 9868 99248126 ~ 99252393 (+) True G210828
TU238967 lncRNA downstream 49478 99287736 ~ 99288047 (+) True G210840
TU238968 lncRNA downstream 52816 99291074 ~ 99291385 (+) True G210841
TU238969 lncRNA downstream 53381 99291639 ~ 99291865 (+) True G210842
TU238970 lncRNA downstream 53846 99292104 ~ 99292572 (+) True G210843
XM_036934808.1 mRNA upstream 26438 99207967 ~ 99210940 (+) True LOC110500866
XM_036960692.1 mRNA upstream 30218 99188901 ~ 99207160 (+) False LOC110502545
XM_036960702.1 mRNA upstream 30218 99188901 ~ 99207160 (+) False LOC110502545
XM_036960709.1 mRNA upstream 30218 99188901 ~ 99207160 (+) True LOC110502545
XM_036960644.1 mRNA upstream 56481 99166363 ~ 99180897 (+) False cops2
XM_036960764.1 mRNA downstream 344753 99583011 ~ 99597608 (+) False duox2
XM_036960784.1 mRNA downstream 398478 99636736 ~ 99678499 (+) True LOC110502564
XM_036934519.1 mRNA downstream 539437 99777695 ~ 99818794 (+) False LOC110502581
XM_036960800.1 mRNA downstream 597360 99835618 ~ 99877214 (+) True LOC110502588
XR_005039265.1 mRNA downstream 645896 99884154 ~ 99891769 (+) True LOC118943910
TU238516 other upstream 310972 98902788 ~ 98926406 (+) True G210484
TU238278 other upstream 337840 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 536986 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 1279542 97957244 ~ 97957836 (+) False G209759
TU237387 other upstream 1464613 97740061 ~ 97772765 (+) True G209636
TU239134 other downstream 481921 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 566910 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 574907 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 658361 99896619 ~ 99899877 (+) False LOC110500919
TU239242 other downstream 658361 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile