RNA id: TU238971


Basic Information

Item Value
RNA id TU238971
length 421
lncRNA type intronic
GC content 0.50
exon number 1
gene id G210844
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99297279 ~ 99297699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtaacgtcgcgacagaggagccagccggatctcattcaggtagataacgtcggcagtccggttgtgaaggcccggtggggctccgcgtaggcagtgaaacgggtccggataggtgactgcagcccaggagtgaatgatggaactcaggagtgattgacggagctggctagcaccggaacaatcgatgtttgctccggaatcgacgaaagccgactgtcacacggatagcagctagctagctgtgagatccgagtatgaatgtccagagagcagttgaaatccagggacatggagagaaaaattggtccggtatgttccgttccgcgctgcgccgtacaaaactggcgatagattttcgatagattttcgagctaaaggacagccgatgaccacaaaccgtggttagcttctgattagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238970 lncRNA upstream 4707 99292104 ~ 99292572 (+) True G210843
TU238969 lncRNA upstream 5414 99291639 ~ 99291865 (+) True G210842
TU238968 lncRNA upstream 5894 99291074 ~ 99291385 (+) True G210841
TU238967 lncRNA upstream 9232 99287736 ~ 99288047 (+) True G210840
TU238944 lncRNA upstream 10035 99234125 ~ 99287244 (+) True G210820
TU238973 lncRNA downstream 5425 99303124 ~ 99303569 (+) False G210845
TU238972 lncRNA downstream 5583 99303282 ~ 99303569 (+) True G210845
TU238975 lncRNA downstream 10224 99307923 ~ 99309452 (+) True G210847
TU238976 lncRNA downstream 12007 99309706 ~ 99310168 (+) True G210848
TU238979 lncRNA downstream 25738 99323437 ~ 99323711 (+) True G210851
XM_036934808.1 mRNA upstream 86339 99207967 ~ 99210940 (+) True LOC110500866
XM_036960692.1 mRNA upstream 90119 99188901 ~ 99207160 (+) False LOC110502545
XM_036960702.1 mRNA upstream 90119 99188901 ~ 99207160 (+) False LOC110502545
XM_036960709.1 mRNA upstream 90119 99188901 ~ 99207160 (+) True LOC110502545
XM_036960669.1 mRNA upstream 116384 99166374 ~ 99180895 (+) True cops2
XM_036960764.1 mRNA downstream 285312 99583011 ~ 99597608 (+) False duox2
XM_036960784.1 mRNA downstream 339037 99636736 ~ 99678499 (+) True LOC110502564
XM_036934519.1 mRNA downstream 479996 99777695 ~ 99818794 (+) False LOC110502581
XM_036960800.1 mRNA downstream 537919 99835618 ~ 99877214 (+) True LOC110502588
XR_005039265.1 mRNA downstream 586455 99884154 ~ 99891769 (+) True LOC118943910
TU238947 other upstream 59021 99237378 ~ 99238258 (+) True G210823
TU238516 other upstream 370873 98902788 ~ 98926406 (+) True G210484
TU238278 other upstream 397741 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 596887 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 1339443 97957244 ~ 97957836 (+) False G209759
TU239134 other downstream 422480 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 507469 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 515466 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 598920 99896619 ~ 99899877 (+) False LOC110500919
TU239242 other downstream 598920 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile