RNA id: TU238976


Basic Information

Item Value
RNA id TU238976
length 463
lncRNA type intronic
GC content 0.37
exon number 1
gene id G210848
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99309706 ~ 99310168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcaggtctctatgtagtactgtgcgcctcccatagtctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238975 lncRNA upstream 254 99307923 ~ 99309452 (+) True G210847
TU238973 lncRNA upstream 6137 99303124 ~ 99303569 (+) False G210845
TU238972 lncRNA upstream 6137 99303282 ~ 99303569 (+) True G210845
TU238971 lncRNA upstream 12007 99297279 ~ 99297699 (+) True G210844
TU238970 lncRNA upstream 17134 99292104 ~ 99292572 (+) True G210843
TU238979 lncRNA downstream 13269 99323437 ~ 99323711 (+) True G210851
TU238980 lncRNA downstream 13747 99323915 ~ 99324184 (+) True G210852
TU238981 lncRNA downstream 16414 99326582 ~ 99326928 (+) True G210853
TU238982 lncRNA downstream 18836 99329004 ~ 99329226 (+) True G210854
TU238985 lncRNA downstream 34308 99344476 ~ 99344753 (+) True G210857
XM_036934808.1 mRNA upstream 98766 99207967 ~ 99210940 (+) True LOC110500866
XM_036960692.1 mRNA upstream 102546 99188901 ~ 99207160 (+) False LOC110502545
XM_036960702.1 mRNA upstream 102546 99188901 ~ 99207160 (+) False LOC110502545
XM_036960709.1 mRNA upstream 102546 99188901 ~ 99207160 (+) True LOC110502545
XM_036960669.1 mRNA upstream 128811 99166374 ~ 99180895 (+) True cops2
XM_036960764.1 mRNA downstream 272843 99583011 ~ 99597608 (+) False duox2
XM_036960784.1 mRNA downstream 326568 99636736 ~ 99678499 (+) True LOC110502564
XM_036934519.1 mRNA downstream 467527 99777695 ~ 99818794 (+) False LOC110502581
XM_036960800.1 mRNA downstream 525450 99835618 ~ 99877214 (+) True LOC110502588
XR_005039265.1 mRNA downstream 573986 99884154 ~ 99891769 (+) True LOC118943910
TU238947 other upstream 71448 99237378 ~ 99238258 (+) True G210823
TU238516 other upstream 383300 98902788 ~ 98926406 (+) True G210484
TU238278 other upstream 410168 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 609314 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 1351870 97957244 ~ 97957836 (+) False G209759
TU239134 other downstream 410011 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 495000 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 502997 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 586451 99896619 ~ 99899877 (+) False LOC110500919
TU239242 other downstream 586451 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile