RNA id: TU239443


Basic Information

Item Value
RNA id TU239443
length 933
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G211229
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99369647 ~ 99405939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatgagagaggagagagagagatgagagaaatgagagagagatatgagaggagagagagatgacagagatgagagagagagatgagaaaaacgagagagagagatgagagagacgagagagttgagagagatgagagagatgaaagatgagagagatgagagagagatatgagaggagagagaggagagagagatgagagagatgagagagagataagagagagatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgttgtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaacagagttccatgtagtcatgtctctatgtagtactgtggaacagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgttgtcatggctctatgtagtactgtagaatagagttccatgtagtcatgtctctatgcagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgttgtcatggctctatgtagtactgtagaatagagttccatgtagtcatgtctctatgcagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239440 lncRNA downstream 2495 99366952 ~ 99367152 (-) True G211226
TU239437 lncRNA downstream 14413 99355006 ~ 99355234 (-) True G211223
TU239434 lncRNA downstream 20869 99348543 ~ 99348778 (-) True G211220
TU239432 lncRNA downstream 22337 99346978 ~ 99347310 (-) True G211218
TU239429 lncRNA downstream 29191 99340199 ~ 99340456 (-) True G211215
TU239490 lncRNA upstream 77742 99483681 ~ 99483963 (-) True G211263
TU239495 lncRNA upstream 85127 99491066 ~ 99525925 (-) True G211268
TU239547 lncRNA upstream 177982 99583921 ~ 99584918 (-) True G211304
TU239550 lncRNA upstream 182215 99588154 ~ 99588426 (-) True G211307
TU239552 lncRNA upstream 184470 99590409 ~ 99590608 (-) True G211309
XM_036960677.1 mRNA downstream 203295 99154260 ~ 99166352 (-) True galk2
XR_005039228.1 mRNA downstream 203296 99154259 ~ 99166351 (-) False galk2
XM_036960690.1 mRNA downstream 204629 99154260 ~ 99165018 (-) False galk2
XM_021578338.2 mRNA downstream 356270 98997411 ~ 99013377 (-) True LOC110500795
XM_021578332.2 mRNA downstream 356506 98997411 ~ 99013141 (-) False LOC110500795
XM_036960769.1 mRNA upstream 137850 99543789 ~ 99582886 (-) True duox
XM_036960779.1 mRNA upstream 194846 99600785 ~ 99615331 (-) True LOC110500900
XM_036934513.1 mRNA upstream 209893 99615832 ~ 99619142 (-) False LOC118936886
XM_036960789.1 mRNA upstream 291280 99697219 ~ 99725326 (-) False LOC110502568
XR_005039255.1 mRNA upstream 291280 99697219 ~ 99725326 (-) False LOC110502568
TU239331 other downstream 245989 99123233 ~ 99123658 (-) True G211127
TU238870 other downstream 343529 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 423578 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 425850 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 1224130 98144320 ~ 98145517 (-) True LOC118936884
TU239562 other upstream 209737 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 304762 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 450374 99856313 ~ 99857855 (-) True G211402
TU239747 other upstream 553618 99959557 ~ 99963474 (-) True G211447
TU239998 other upstream 667308 100073247 ~ 100073797 (-) True G211630

Expression Profile