RNA id: TU239495



Basic Information


Item Value
RNA id TU239495
length 341
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G211268
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99491066 ~ 99525925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtgattattattatttgaccatgctggtcatttatgatcatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatatgcagtgcctt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU239490 lncRNA downstream 7103 99483681 ~ 99483963 (-) True G211263
TU239443 lncRNA downstream 85127 99369647 ~ 99405939 (-) False G211229
TU239547 lncRNA upstream 57996 99583921 ~ 99584918 (-) True G211304
TU239550 lncRNA upstream 62229 99588154 ~ 99588426 (-) True G211307
TU239552 lncRNA upstream 64484 99590409 ~ 99590608 (-) True G211309
TU239556 lncRNA upstream 71176 99597101 ~ 99597592 (-) True G211313
TU239557 lncRNA upstream 72430 99598355 ~ 99598683 (-) True G211314
XM_036960758.1 mRNA downstream 115104 99221850 ~ 99375962 (-) False tjp1b
XM_036960677.1 mRNA downstream 324714 99154260 ~ 99166352 (-) True galk2
XR_005039228.1 mRNA downstream 324715 99154259 ~ 99166351 (-) False galk2
XM_036960690.1 mRNA downstream 326048 99154260 ~ 99165018 (-) False galk2
XM_021578338.2 mRNA downstream 477689 98997411 ~ 99013377 (-) True LOC110500795
XM_036960769.1 mRNA upstream 17864 99543789 ~ 99582886 (-) True duox
XM_036960779.1 mRNA upstream 74860 99600785 ~ 99615331 (-) True LOC110500900
XM_036934513.1 mRNA upstream 89907 99615832 ~ 99619142 (-) False LOC118936886
XM_036960789.1 mRNA upstream 171294 99697219 ~ 99725326 (-) False LOC110502568
XR_005039255.1 mRNA upstream 171294 99697219 ~ 99725326 (-) False LOC110502568
TU239331 other downstream 367408 99123233 ~ 99123658 (-) True G211127
TU238870 other downstream 464948 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 544997 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other downstream 547269 98942474 ~ 98943797 (-) True LOC118943882
TU238041 other downstream 1345549 98144320 ~ 98145517 (-) True LOC118936884
TU239562 other upstream 89751 99615676 ~ 99615914 (-) True LOC118936886
TU239603 other upstream 184776 99710701 ~ 99713563 (-) False LOC110502568
TU239696 other upstream 330388 99856313 ~ 99857855 (-) True G211402
TU239747 other upstream 433632 99959557 ~ 99963474 (-) True G211447
TU239998 other upstream 547322 100073247 ~ 100073797 (-) True G211630

Expression Profile