RNA id: TU239080


Basic Information

Item Value
RNA id TU239080
length 436
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G210942
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99572063 ~ 99573106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCAGAGGCCCGTACATATAATCTAGTGGGGAGAAGGCCCACCAATATACATCAATATttattacttttatttatttttatttatttatttattttttcttaaaacggcattgttggttaaggggcttcgtaagtaagcatttcactgtaagctctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacttgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239064 lncRNA upstream 27751 99529677 ~ 99544312 (+) True G210926
TU239037 lncRNA upstream 79913 99491310 ~ 99492150 (+) True G210903
TU239023 lncRNA upstream 99865 99470168 ~ 99472198 (+) True G210892
TU239019 lncRNA upstream 161498 99407565 ~ 99410565 (+) True G210888
TU238995 lncRNA upstream 166338 99369692 ~ 99405725 (+) False G210867
TU239091 lncRNA downstream 8759 99581865 ~ 99587267 (+) False duox2
TU239092 lncRNA downstream 10671 99583777 ~ 99584944 (+) True G210950
TU239089 lncRNA downstream 23516 99596622 ~ 99597258 (+) True duox2
TU239112 lncRNA downstream 42604 99615710 ~ 99615930 (+) True G210966
TU239115 lncRNA downstream 47091 99620197 ~ 99620654 (+) False G210969
XM_036934808.1 mRNA upstream 361123 99207967 ~ 99210940 (+) True LOC110500866
XM_036960692.1 mRNA upstream 364903 99188901 ~ 99207160 (+) False LOC110502545
XM_036960702.1 mRNA upstream 364903 99188901 ~ 99207160 (+) False LOC110502545
XM_036960709.1 mRNA upstream 364903 99188901 ~ 99207160 (+) True LOC110502545
XM_036960669.1 mRNA upstream 391168 99166374 ~ 99180895 (+) True cops2
XM_036960764.1 mRNA downstream 9905 99583011 ~ 99597608 (+) False duox2
XM_036960784.1 mRNA downstream 63630 99636736 ~ 99678499 (+) True LOC110502564
XM_036934519.1 mRNA downstream 204589 99777695 ~ 99818794 (+) False LOC110502581
XM_036960800.1 mRNA downstream 262512 99835618 ~ 99877214 (+) True LOC110502588
XR_005039265.1 mRNA downstream 311048 99884154 ~ 99891769 (+) True LOC118943910
TU238947 other upstream 333805 99237378 ~ 99238258 (+) True G210823
TU238516 other upstream 645657 98902788 ~ 98926406 (+) True G210484
TU238278 other upstream 672525 98897524 ~ 98899538 (+) True LOC110510476
TU238408 other upstream 871671 98697168 ~ 98700392 (+) True G210408
TU237549 other upstream 1614227 97957244 ~ 97957836 (+) False G209759
TU239134 other downstream 147073 99720179 ~ 99721983 (+) True G210983
TU239220 other downstream 232062 99805168 ~ 99811927 (+) False LOC110502581
TU239221 other downstream 240059 99813165 ~ 99814375 (+) True LOC110502581
TU239241 other downstream 323513 99896619 ~ 99899877 (+) False LOC110500919
TU239242 other downstream 323513 99896619 ~ 99899877 (+) False LOC110500919

Expression Profile