RNA id: TU239696


Basic Information

Item Value
RNA id TU239696
length 1052
RNA type TUCP
GC content 0.48
exon number 2
gene id G211402
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99856313 ~ 99857855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATTGGGTACAGGTCTATAGATTAGGTAAAGGTATAGATCGGGTACGGGTGGGTATAGGTATAGATTGGGTACAGGTGGGTATAGGTATAGATTGGGTACAGGTGGGTATAGGTATAGATTGGGTACAGGTGGGTATAGGTATAGATTGGGTACAGGTGGGTATAGGTATAGATTGGGTACAGGTGGGTATAGGTATAGATTGGGTATCTATACCTATACCCAATCTATACCTATACCCGCTTGTACCCAATCTATACCCACGTGTACCCAATCTATACCCAGTGGTACCCAATCTATACCCAGTGGTACCCAATCTATACCCACTTGTACCCAATCTATACCCACTTGTACCCAATCTATACCTATACCCGCCTATACCCACTTAAACCCAATCTATATCTATAACCACCTATACCCAATCTATACCCAATCTATATCTATACCCGTCTATAACCAACCTATACCCAATCTATACCCGCCTATACCCAATCTATACCCAATCTATCCCCAAATCTATATCTATACCCAATCTATACCTATACCCAATCTATACCTACTGTAACTATCACTCACCCAGGCCACTGATGGTGTATTCTGTGTCCTCAGGCTGGAGCTGGATGGAGGGCTGTTCTGGTTGGCCCTCCTCATGGTAACAGAGCCGGTAACCCTGGACGACCACGGAGCCTGGAGATGGCTGCCATCGAACCAAGATGGAGGTGCAGTTGAGAGGCTCCAGTTGCTGCAGCAGTGGGGCAGGTGGCACTGTGGGGACACAGGAAGGAGAGTTGGTACGAAGAGGATGATGAAGGACACAGGAAGGAGAGTCGGTACGAAGAGGATGATGAAGGACACAGGAAGGAGAGTTGGCatgaagaggatgatgaaggacacaggaaggagagcagggaggaagaggatgatgaaggACACAGGAAGGAGAGTCGGCatgaagaggatgatgaaggACACAGGAAGGAGAGTCGGCatgaagaggatgatgaaggACACAGGAAGGAGAGTCGGCatgaagaggatgatgaaggACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239683 lncRNA downstream 1384 99854056 ~ 99854929 (-) True G211395
TU239692 lncRNA downstream 9540 99845049 ~ 99846773 (-) False G211401
TU239693 lncRNA downstream 9540 99845049 ~ 99846773 (-) True G211401
TU239666 lncRNA downstream 29515 99822225 ~ 99826798 (-) True G211389
TU239676 lncRNA downstream 29914 99823930 ~ 99826399 (-) False G211390
TU239704 lncRNA upstream 11071 99868926 ~ 99870250 (-) True G211409
TU239727 lncRNA upstream 59681 99917536 ~ 99918921 (-) True G211430
TU239738 lncRNA upstream 76678 99934533 ~ 99935613 (-) True G211440
TU239723 lncRNA upstream 93544 99951399 ~ 99952377 (-) True G211427
TU239724 lncRNA upstream 95053 99952908 ~ 99953369 (-) True G211428
XM_036960791.1 mRNA downstream 101423 99726231 ~ 99754890 (-) False LOC110502573
XM_036960790.1 mRNA downstream 130986 99697219 ~ 99725327 (-) False LOC110502568
XM_036960789.1 mRNA downstream 130987 99697219 ~ 99725326 (-) False LOC110502568
XR_005039255.1 mRNA downstream 130987 99697219 ~ 99725326 (-) False LOC110502568
XM_036934513.1 mRNA downstream 237171 99615832 ~ 99619142 (-) False LOC118936886
XM_036960879.1 mRNA upstream 245697 100103552 ~ 100113945 (-) True LOC110500962
XM_036960894.1 mRNA upstream 256974 100114829 ~ 100124477 (-) False spi1a
XM_036960892.1 mRNA upstream 256974 100114829 ~ 100126246 (-) True spi1a
XM_036960922.1 mRNA upstream 302078 100159933 ~ 100161971 (-) False LOC110500995
XM_036960958.1 mRNA upstream 362176 100220031 ~ 100340996 (-) True ano3
TU239603 other downstream 142750 99710701 ~ 99713563 (-) False LOC110502568
TU239562 other downstream 240399 99615676 ~ 99615914 (-) True LOC118936886
TU239331 other downstream 732655 99123233 ~ 99123658 (-) True G211127
TU238870 other downstream 830195 99025732 ~ 99026118 (-) True G210765
TU238753 other downstream 910244 98918448 ~ 98946069 (-) True LOC118943885
TU239747 other upstream 101702 99959557 ~ 99963474 (-) True G211447
TU239998 other upstream 215392 100073247 ~ 100073797 (-) True G211630
TU240003 other upstream 218828 100076683 ~ 100077772 (-) True G211633
TU240081 other upstream 297217 100155072 ~ 100159955 (-) False LOC110500995
TU240080 other upstream 297781 100155636 ~ 100159955 (-) True LOC110500995

Expression Profile