RNA id: TU239935


Basic Information

Item Value
RNA id TU239935
length 238
lncRNA type intronic
GC content 0.37
exon number 1
gene id G211578
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100325245 ~ 100325482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGTCCTACTCATAATGAACAGAGAGGATATAGACCCTAAGATGTTGTCCTACTCATAATGAACAGAGAGGATATAGACCCTAAGATGTTGTCCTACTCATAATGAACAGAGAGGATATGTATGATTCAATTGAATTGATAACACTTTTGTCATTGTCAACTAGCAGGtatgtaggctacagtaggcaCTGCATTAAATACTTGTCTGTGGTTTGGAGAGTGGTCTGTACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239930 lncRNA upstream 13296 100310522 ~ 100311949 (+) True G211573
TU239929 lncRNA upstream 13823 100310522 ~ 100311422 (+) False G211573
TU239918 lncRNA upstream 73804 100251223 ~ 100251441 (+) True G211564
TU239917 lncRNA upstream 74875 100250165 ~ 100250370 (+) True G211563
TU239916 lncRNA upstream 95908 100229124 ~ 100229337 (+) True G211562
TU239939 lncRNA downstream 8046 100333528 ~ 100333890 (+) True G211582
TU240166 lncRNA downstream 18875 100344357 ~ 100351832 (+) False LOC110501220
TU240167 lncRNA downstream 22670 100348152 ~ 100351832 (+) True LOC110501220
TU240174 lncRNA downstream 32578 100358060 ~ 100365828 (+) True G211736
TU240212 lncRNA downstream 46938 100372420 ~ 100374476 (+) True G211766
XM_036960937.1 mRNA upstream 116022 100177193 ~ 100209223 (+) False slc5a12
XM_036960947.1 mRNA upstream 116123 100177192 ~ 100209122 (+) False slc5a12
XM_036960908.1 mRNA upstream 184669 100133134 ~ 100140576 (+) False LOC110500984
XM_036960904.1 mRNA upstream 184669 100134189 ~ 100140576 (+) True LOC110500984
XM_036960865.1 mRNA upstream 246835 100052262 ~ 100078410 (+) False LOC110502598
XR_005039287.1 mRNA downstream 17068 100342550 ~ 100351946 (+) False LOC110501220
XM_036960970.1 mRNA downstream 17079 100342561 ~ 100351946 (+) False LOC110501220
XR_005039288.1 mRNA downstream 17105 100342587 ~ 100351946 (+) False LOC110501220
XR_002470188.2 mRNA downstream 17107 100342589 ~ 100351946 (+) False LOC110501220
XM_021578575.2 mRNA downstream 17574 100343056 ~ 100351946 (+) False LOC110501220
TU239241 other upstream 425368 99896619 ~ 99899877 (+) False LOC110500919
TU240232 other downstream 134175 100459657 ~ 100461981 (+) True G211779
TU240278 other downstream 142196 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1156929 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1156929 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1184278 101509760 ~ 101510842 (+) False G212674

Expression Profile