RNA id: TU239939


Basic Information

Item Value
RNA id TU239939
length 363
lncRNA type intronic
GC content 0.43
exon number 1
gene id G211582
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100333528 ~ 100333890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attattgactgtgtgtttgttttactccatgtgtgtcgttgtgtgtgtcgaactgctttgctttatcttggccaggttacagttgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaacttgcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaacttgcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239935 lncRNA upstream 8046 100325245 ~ 100325482 (+) True G211578
TU239930 lncRNA upstream 21579 100310522 ~ 100311949 (+) True G211573
TU239929 lncRNA upstream 22106 100310522 ~ 100311422 (+) False G211573
TU239918 lncRNA upstream 82087 100251223 ~ 100251441 (+) True G211564
TU239917 lncRNA upstream 83158 100250165 ~ 100250370 (+) True G211563
TU240166 lncRNA downstream 10467 100344357 ~ 100351832 (+) False LOC110501220
TU240167 lncRNA downstream 14262 100348152 ~ 100351832 (+) True LOC110501220
TU240174 lncRNA downstream 24170 100358060 ~ 100365828 (+) True G211736
TU240212 lncRNA downstream 38530 100372420 ~ 100374476 (+) True G211766
TU240215 lncRNA downstream 47929 100381819 ~ 100382069 (+) True G211768
XM_036960937.1 mRNA upstream 124305 100177193 ~ 100209223 (+) False slc5a12
XM_036960947.1 mRNA upstream 124406 100177192 ~ 100209122 (+) False slc5a12
XM_036960908.1 mRNA upstream 192952 100133134 ~ 100140576 (+) False LOC110500984
XM_036960904.1 mRNA upstream 192952 100134189 ~ 100140576 (+) True LOC110500984
XM_036960865.1 mRNA upstream 255118 100052262 ~ 100078410 (+) False LOC110502598
XR_005039287.1 mRNA downstream 8660 100342550 ~ 100351946 (+) False LOC110501220
XM_036960970.1 mRNA downstream 8671 100342561 ~ 100351946 (+) False LOC110501220
XR_005039288.1 mRNA downstream 8697 100342587 ~ 100351946 (+) False LOC110501220
XR_002470188.2 mRNA downstream 8699 100342589 ~ 100351946 (+) False LOC110501220
XM_021578575.2 mRNA downstream 9166 100343056 ~ 100351946 (+) False LOC110501220
TU239241 other upstream 433651 99896619 ~ 99899877 (+) False LOC110500919
TU240232 other downstream 125767 100459657 ~ 100461981 (+) True G211779
TU240278 other downstream 133788 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1148521 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1148521 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1175870 101509760 ~ 101510842 (+) False G212674

Expression Profile