RNA id: TU240265


Basic Information

Item Value
RNA id TU240265
length 202
lncRNA type intronic
GC content 0.52
exon number 1
gene id G211796
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100446745 ~ 100446946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgcagctgctgttgctaactcaacggctaggaggtatcacttctgtagtgaataagagttcaaagttcataccattcgcaaccaaagctcacgctgatgttggcttcgttctgtagttattatctgaaccattctgacatcggaccgtcgtcctcacatcctcggaacaggaggttatattgtcgtcaaggctttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240215 lncRNA upstream 64676 100381819 ~ 100382069 (+) True G211768
TU240212 lncRNA upstream 72269 100372420 ~ 100374476 (+) True G211766
TU240174 lncRNA upstream 80917 100358060 ~ 100365828 (+) True G211736
TU240166 lncRNA upstream 94913 100344357 ~ 100351832 (+) False LOC110501220
TU240167 lncRNA upstream 94913 100348152 ~ 100351832 (+) True LOC110501220
TU240266 lncRNA downstream 165 100447111 ~ 100447429 (+) True G211797
TU240270 lncRNA downstream 7690 100454636 ~ 100454836 (+) True G211801
TU240273 lncRNA downstream 15054 100462000 ~ 100462554 (+) True G211804
TU240274 lncRNA downstream 16003 100462949 ~ 100464466 (+) True G211805
TU240275 lncRNA downstream 17852 100464798 ~ 100465004 (+) True G211806
XM_021578569.2 mRNA upstream 2509 100438486 ~ 100444236 (+) True LOC110501156
XM_036934528.1 mRNA upstream 27571 100417074 ~ 100419174 (+) True LOC118936889
XR_005039287.1 mRNA upstream 94799 100342550 ~ 100351946 (+) False LOC110501220
XM_036961133.1 mRNA downstream 191628 100638574 ~ 100655606 (+) False sigirr
XM_036961124.1 mRNA downstream 191632 100638578 ~ 100655606 (+) True sigirr
XM_036961077.1 mRNA downstream 338585 100785531 ~ 100826270 (+) False LOC110502612
XM_036961073.1 mRNA downstream 338585 100785531 ~ 100848341 (+) True LOC110502612
XM_036934538.1 mRNA downstream 401228 100848174 ~ 100859262 (+) False LOC118936893
TU239241 other upstream 546868 99896619 ~ 99899877 (+) False LOC110500919
TU240232 other downstream 12711 100459657 ~ 100461981 (+) True G211779
TU240278 other downstream 20732 100467678 ~ 100468157 (+) True G211809
TU241421 other downstream 1035465 101482411 ~ 101486796 (+) False G212656
TU241428 other downstream 1035465 101482411 ~ 101486796 (+) True G212656
TU241453 other downstream 1062814 101509760 ~ 101510842 (+) False G212674

Expression Profile